Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2300 ATGGAGTCCATTTTTGTGCTTCTTGTGATCTTTGTTGTGGCATCAAATCCAGGCTCAGCAGCTCCCTCTCCCTTTAGCAACAATTCAACATGCCCAGTGACCATGAATTATGTGCTAACAGTACCTTGGAACCCCTCTAGCTGCCTTAACTTAAACCAAACACACACAATTCTTTGTTGCCAAACTTTGTTATCCCTCTTTGGCATAGCACTTGCAGAAAACCTCAAGAAAAACTCTCTTTTCCAACTTCCTAACATCACTACCTCCGCATCTTGCCTTCAAGATTTCCAATCCAAACTCACTTCCCTTTCACTTCCCAATAACATTGTGTCCTCTTGCTTTGATCCTCTTCAATTTGTCATCACTCCCAATATCTGTGCTCATATTCAATATAAGCAAGATTGGCAAAGTAGGCTTGGTCCTACACCGCTGTTAAACACTGCATGTAAACCAGACCTTAGTGATCTTACCAATTGTGCTGCATGTGTGGATGAAGGACTCAAGGTTGTACAGATGCTGAATTCTATTGATGGAAATACTTCACATTCTGAAAATTGCTTTTATTTCACAATACTTTATATTGCTGGAATTGTGAATGATCTTGGACCTGAAAGCAAAGGTACCATGCCTTGTATTTTTGAATTGTCAATTAGTTCTCAAGCGGGTTCGAGAAACGGCCATCGTGATCTTGTATGTGGGTTAACTGCAGCTACACTTGCATTCCTGGTTATTATTGTGTTAGGATTGTACTTTTGGTACACCTTGTGGTTGAAGAGGAAAAATGTTGAAAATTTGCTAGCCTATGCTGATCCACAGGAACGAGGGTCTAGCCTAAGATTGAGACCAAATACAGGGCTAATTTGGTTCAAGTTTGAGGACCTTGTGAAGGCCACTGACAATTTTTCAGCCGAGAACTTCATTGGCAGAGGTGGGTTTGGATCAGTTTACAAAGGCATTCTACCTGATGGCACAATGGTTGCAATTAAAGGGATTGAGGAATTTGATTCTCAAGGAGATGAGTCCTACAGTGAGGTGGAGATTGTTAGCAACTTGAAGCACCGTAATCTGGTACCATTAAGAGGGTGTTGTGTGGTTAATGATAATCTTGAAATCAGAAGGTATCTTGTTCAGGATTATATGCCAAATGGTAGCCTTGAAGACCATCTCTTTTCAACCATATTGGATGGTCAAAATATAAAGAAATCACTAAGTTGGCCTCAAAGAAGAAGCATAATCTTGGATGTGGCAAATGCGTTGCTTTATTTGCACTTTGGAGTTAAACCCGCAATTTATCACAGAGACATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCAAAGGTTGCAGATTTTGGGCTAGCCAAGGAAAGCAGTGAAAGTAGGTCTAATCTAAACACACGAGTAGCTGGAACTCGTGGATATTTGGCTCCAGAATATGCACTTTATGGTCAGCTGACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTAGTTTTGGAGATAATGTGTGGAAGAAAAGCTCTTGAGTTGTCTTCATCAGGAGCACCTGTTTTCTTGATCACAGATTGGGTTTGGTCACTAATGAAATCTGGAAACATAGAAGAGGCTTTGGATGCTTCTATGTTAATAGATGGAAATACTGTTAGAAACATAATGGAGAGATTTTTGCTTGTTGGAGTTCTTTGTTCTCATGTAATGGTTAGTTCAAGGCCAACAATTTTGAATGCTTTGAAGATGTTAGAAGGGGACATTGAGGTTCCACCAATTCCTGATAGGCCAGTGACTCTTGGTCACTATGTGTATTACAATGGTGATTGCTCTGGGATGAGCTCAGAATGTGGGTTCAAAAGCTTATGA 1863 0.4053 MESIFVLLVIFVVASNPGSAAPSPFSNNSTCPVTMNYVLTVPWNPSSCLNLNQTHTILCCQTLLSLFGIALAENLKKNSLFQLPNITTSASCLQDFQSKLTSLSLPNNIVSSCFDPLQFVITPNICAHIQYKQDWQSRLGPTPLLNTACKPDLSDLTNCAACVDEGLKVVQMLNSIDGNTSHSENCFYFTILYIAGIVNDLGPESKGTMPCIFELSISSQAGSRNGHRDLVCGLTAATLAFLVIIVLGLYFWYTLWLKRKNVENLLAYADPQERGSSLRLRPNTGLIWFKFEDLVKATDNFSAENFIGRGGFGSVYKGILPDGTMVAIKGIEEFDSQGDESYSEVEIVSNLKHRNLVPLRGCCVVNDNLEIRRYLVQDYMPNGSLEDHLFSTILDGQNIKKSLSWPQRRSIILDVANALLYLHFGVKPAIYHRDIKATNILLDADMRAKVADFGLAKESSESRSNLNTRVAGTRGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALELSSSGAPVFLITDWVWSLMKSGNIEEALDASMLIDGNTVRNIMERFLLVGVLCSHVMVSSRPTILNALKMLEGDIEVPPIPDRPVTLGHYVYYNGDCSGMSSECGFKSL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2300 620 Gene3D Phosphorylase Kinase; domain 1 269 379 - -
Apr3g2300 620 Pfam Protein kinase domain 303 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2300 620 ProSiteProfiles Protein kinase domain profile. 301 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2300 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Apr3g2300 620 CDD STKc_IRAK 307 584 - -
Apr3g2300 620 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 23 599 - -
Apr3g2300 620 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 599 - -
Apr3g2300 620 Gene3D Transferase(Phosphotransferase) domain 1 380 588 - -
Apr3g2300 620 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Apr3g2300 620 SUPERFAMILY Protein kinase-like (PK-like) 278 583 IPR011009 -
Apr3g2300 620 Pfam SPARK 27 187 IPR043891 -
Apr3g2300 620 SMART serkin_6 301 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2300 Apr-Chr3 38599853 38601715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2300 26 603 Receptor kinase-like Gene Family AT1G11050 58.744 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Apr3g2300 Pkinase 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2300 - - gmx:100788367 919.457