Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2296 ATGGATCGTGGTGGTGACATTATCCAAATCAGTCCATACAAGGACAATGAAGGCCATAAGGAAAAGGAACCGATTTTCTTACATGGTGACTTGGATATGTTGATAATAGAAGCGAAGTCTCTTCCAAATTTAGATTTATCCGGTGAAGCTGTTAGAAAATGTATGACTATGGGCAACATGTGCCATCCTCCGTTTATGAAAGGACGAAAGTCACACTCTGGAAAAGAGAAGATGATAACTAGTGACCCTTATGTCTCTGTGTGCCTAGCTGGGGCTACCATAGCTAGGACTAGAGTGATTCCTAACTGTGAGAACCCTTTGTGGGAGGAGCAATTTGTTGTGCCTGTTGCTCACCCTGCTCAAAAAGTGGAGTTCCTTGTGAAGGATAATGACATTCTTGGGGCTGAACTCATTGGAGTTGTGGAAATACCTGTTCACAGGATACTCCCAGGAAATGTTATTAATGATTGGTTTCCCATCATTGGTCAGTATGGAAATTGCTTAAAACCTTATCCTGAGTTGCATATTTCTATTCAGTATAAGCCAATTGGAATAAAGCCGTCAGAAAGTGTCAGTTATGAGGATGGAACAGCTTGTTTAGGAGTTCCTAATACATATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATTTGCCAGATGGTATGCTACCTGAGATTCCACTGGAGGGTGGGAAAGTGTTTCAGCACAGTAAATGTTGGGAGGATATATGCCACGCAATTTTGGAAGCTCATCACTTGATATATATTATAGGGTGGTCGATTTATCACCCAGTAAGGCTTGTTAGAGAGCCAACAAAACCATTACCTTCTGGAGGAGAGCTTTCACTTGGAGAGCTGTTGAAATACAAGTCACAAGAAGGGCTCCGAGTGGTTATGCTGATTTGGGATGACAGAACTTCACATGACAAGTTTCTTTTGAAAACTGATGGTGTCATGCAGACTCACGATGAAGAAACCAAAAAGTTTTTTAAACATTCCACGGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAGCTCAGCATTTTCAAGCAACAGGTTGTGGGAACCCTCTTTACACATCATCAGAAATGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATCGTAAAATAACAGCTTTTATTGGTGGTTTAGATCTATGCGATGGCAGATATGATACACCAGAGCATCGGCTTTTTTGTGATCAAGATACAGTCTTTCATAATGATTTTCATAATCCTACATTTCAAATAAACTCTGGTGGACCAAGGCAACCATGGCATGACTTACATTGCAAAATTGATGGTCCAGCAGCATATGATATATTGACCAACTTTGAGCAAAGATGGAGGAAGGCCAAAAAATGGCGTGATTTTCGGCTCAAAAAGGTGACAAATTGGCACGATGATGCTTTGCTTAGGCTAGATCGTATTTCATGGATTCTCAAACCATCTTTTGGTCCTGATGGTGATGAAGCTGTTCATATAACTGATCCAAATGATCCTGAGAGTTGGAATGTGCAGGTATTTAGGTCCATAGATTCTGGATCTGTAAAGGGCTTTCCAAAGGACTTTGACAAAGCTAAGGCTCAGAATCTTTTATGTGGAAAAAATTTGAAAGTAGATCAAAGCATTCATACTGCTTATGTAAAAGCAATAAGATCGGCTCAGCACTTCATATATATTGAGAATCAATATTTTTTGGGATCCTCATATCATTGGCCTTCATATAAAAATGCAGGTGCAAATCACTTGATTCCCATGGAGTTGGCTTTGAAAATTGCTAGTAAGATCTACGCAGATGAACGTTTTTCTGTATATATAGTTATACCGATGTGGCCGGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACATGATTATTGCTGATGCCCTTAGAAAAGCAGGGCTATCAGATCAGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCTCAATGCTCAGAAAGTCCACCTACACAAAATCAATCTTCTGAAAATCGTTCTTTGGTATCAGTTAAAAAATTCAGACGTTTCATGATTTATGTTCATGCCAAAGGAATGATTGTTGATGACGAATACGTAATCATTGGATCAGCAAATATCAACCAGAGATCATTAGACGGTTCAAGAGACACTGAAATAGCTATGGGTGCTTATCAACCAAAATATACGTTTAAACAAAAGAATTCTCATCCACGTGGCCAGGTTTATGGATACCGAATGTCACTGTGGGCTGAGCACCTTGGTAGTCTTGATGGCATTTTTGGTGAACCTCATAGCCTTGAATGTGTTAGATATGTCAACAAAATTGCCAGACAAAACTGGGAAATATATGTGTCTGAGGAAAATAATCAAATGAGGGGACACTTGATGCAGTATCCAGTTAAGGTCTGCAAGACTGGAAAAGTAACTGCACTGGATGATTATGAGTGCTTTCCTGATGTTGGTGGCAAAATTCTTGGATCAGCCAATTCACTTCCGGATGCACTGACCACATGA 2577 0.4012 MDRGGDIIQISPYKDNEGHKEKEPIFLHGDLDMLIIEAKSLPNLDLSGEAVRKCMTMGNMCHPPFMKGRKSHSGKEKMITSDPYVSVCLAGATIARTRVIPNCENPLWEEQFVVPVAHPAQKVEFLVKDNDILGAELIGVVEIPVHRILPGNVINDWFPIIGQYGNCLKPYPELHISIQYKPIGIKPSESVSYEDGTACLGVPNTYFPLRKGGSVTLYQDAHLPDGMLPEIPLEGGKVFQHSKCWEDICHAILEAHHLIYIIGWSIYHPVRLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFCDQDTVFHNDFHNPTFQINSGGPRQPWHDLHCKIDGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWILKPSFGPDGDEAVHITDPNDPESWNVQVFRSIDSGSVKGFPKDFDKAKAQNLLCGKNLKVDQSIHTAYVKAIRSAQHFIYIENQYFLGSSYHWPSYKNAGANHLIPMELALKIASKIYADERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYMIIADALRKAGLSDQYHPQDYLNFYCLGKREPQCSESPPTQNQSSENRSLVSVKKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTFKQKNSHPRGQVYGYRMSLWAEHLGSLDGIFGEPHSLECVRYVNKIARQNWEIYVSEENNQMRGHLMQYPVKVCKTGKVTALDDYECFPDVGGKILGSANSLPDALTT* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2296 858 PANTHER PHOSPHOLIPASE D 23 858 IPR015679 -
Apr3g2296 858 SMART C2_3c 30 157 IPR000008 -
Apr3g2296 858 Gene3D C2 domain 25 181 IPR035892 -
Apr3g2296 858 SMART pld_4 363 398 IPR001736 GO:0003824
Apr3g2296 858 SMART pld_4 704 731 IPR001736 GO:0003824
Apr3g2296 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
Apr3g2296 858 Gene3D Endonuclease Chain A 519 756 - -
Apr3g2296 858 ProSiteProfiles C2 domain profile. 11 158 IPR000008 -
Apr3g2296 858 CDD C2_plant_PLD 24 180 - -
Apr3g2296 858 SUPERFAMILY Phospholipase D/nuclease 202 465 - -
Apr3g2296 858 Gene3D Endonuclease Chain A 236 478 - -
Apr3g2296 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824
Apr3g2296 858 Pfam PLD-like domain 559 740 IPR025202 -
Apr3g2296 858 Pfam Phospholipase D Active site motif 364 398 IPR001736 GO:0003824
Apr3g2296 858 PANTHER PHOSPHOLIPASE D 23 858 - -
Apr3g2296 858 SUPERFAMILY Phospholipase D/nuclease 550 773 - -
Apr3g2296 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 182 IPR035892 -
Apr3g2296 858 PIRSF PLD_plant 16 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Apr3g2296 858 Pfam Phospholipase D C terminal 780 848 IPR024632 -
Apr3g2296 858 Pfam C2 domain 29 160 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2296 Apr-Chr3 38564799 38573062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2296 25 857 Phospholipase D Gene Family (Wang group) AT2G42010 55.104 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2296 K01115 - gmx:100779740 1540.4