LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g2290	ATGGAAAGCGTTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTCTCGGCGGGGTCGCTGCGGAAGAACCTTTCGCGCCAGTTCACGCGGCAGGCCTCGCTGGATCCGCGGCGGAACAATCTCCGATTCAGCTTCGGACGCCAGTCCTCGCTCGATCCAATTCGGCGGAGTCCGGCCTCCGACCAGGCGAAGCTTACGGTCCCCGAGAATCTGGACTCGACGATGCAGCTTCTGTTCATGGCCTGTAGAGGTGATGTTAAGGGAGTGGAGGATTTGCTCGACGAAGGCATTGACGTCAATAGTATCGACCTTGACGGCCGCACCGCCCTCCACATCGCCGCCTGCGAGGGCCACGTCGAAGTTGCTAGGCTCTTGCTCACGCGCAAGGCCAACATCGACGCTCGTGATCGCTGGGGCAGTACGGCAGCGGCTGATGCAAAATATTATGGAAATACAGAAGTTTATTACATGTTGAAGGCCCGTGGAGCAAAAGTGCCGAAAACCAGAAAGACTCCAATGACTGTTGCAAATCCTCGTGAAGTTCCAGAATATGAACTCAACCCATTAGAACTACAGGTTCGGAAGAGTGATGGTATTTCAAAGGGAACATATCAAGTAGCAAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGACAAGGACAGTTATTCAGATCCTGAAACCATAAATGCTTTCAAACATGAACTCACAATATTAGAAAGGGTGCGACATCCTAATGTGGTCCAGTTTGTTGGAGCTGTCACCCAAAATATACCTATGATGATTGTGCGTGAGTACCATGCTAAGGGTGACCTGGCAAGCTATCTTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGCTTTCTCTTGATATTGCTAGGGGCATGAACTATCTTCATGAGTGCAAACCAGATCCGGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAAATAGCTGGATTTGGCACTGTGGGATTTTCGCTAATCTCACCTGATAAAGCAAAGCTGGTAGAGCCCGAGGCTACCATTGACCGTTCAAGCTTGTACGTGGCACCGGAAATTTACAAAGACGATGTATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTCATTGTATATGAGATGATAGAGGGTGTACAGCCCTTACATCCCAAGCCCCCGGAGGAGGCAGTGAAACTGTTGTGCTTAGAAGGGAAAAGACCCCCATTCAAGATCAAAACAAAACATTATCCTCCGGATTTGAAAGAATTGATTGAGGAATGTTGGGATCCACAACCTGTTGTCAGGCCAACATTTTCTCAGGTCATTGTACGGCTGGACAAAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCTTGGAAATAA	1428	0.479	MESVAAQLKRGISRQFSAGSLRKNLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPASDQAKLTVPENLDSTMQLLFMACRGDVKGVEDLLDEGIDVNSIDLDGRTALHIAACEGHVEVARLLLTRKANIDARDRWGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPETINAFKHELTILERVRHPNVVQFVGAVTQNIPMMIVREYHAKGDLASYLQKKGRLSPSKVLRLSLDIARGMNYLHECKPDPVIHCDLKPKNILLDNGGQLKIAGFGTVGFSLISPDKAKLVEPEATIDRSSLYVAPEIYKDDVFDRSVDAYSFGLIVYEMIEGVQPLHPKPPEEAVKLLCLEGKRPPFKIKTKHYPPDLKELIEECWDPQPVVRPTFSQVIVRLDKIVANCSKQGWWKDTFKLPWK*	476

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr3g2290	475	PRINTS	Tyrosine kinase catalytic domain signature	266	279	IPR001245	GO:0004672\|GO:0006468
Apr3g2290	475	PRINTS	Tyrosine kinase catalytic domain signature	305	323	IPR001245	GO:0004672\|GO:0006468
Apr3g2290	475	PRINTS	Tyrosine kinase catalytic domain signature	377	399	IPR001245	GO:0004672\|GO:0006468
Apr3g2290	475	PRINTS	Tyrosine kinase catalytic domain signature	424	446	IPR001245	GO:0004672\|GO:0006468
Apr3g2290	475	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	33	473	-	-
Apr3g2290	475	CDD	STKc_MAP3K-like	200	453	-	-
Apr3g2290	475	Pfam	Protein tyrosine and serine/threonine kinase	200	452	IPR001245	GO:0004672\|GO:0006468
Apr3g2290	475	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	311	323	IPR008271	GO:0004672\|GO:0006468
Apr3g2290	475	SUPERFAMILY	Ankyrin repeat	75	175	IPR036770	-
Apr3g2290	475	ProSiteProfiles	Ankyrin repeat profile.	106	138	IPR002110	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g2290	Apr-Chr3	38511484	38517609	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g2290	1	475	MAP Kinase Kinase Kinase	AT2G31800	78.361	0.0	803

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Apr3g2290		PK_Tyr_Ser-Thr	1.6e-48	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g2290	-		-	aprc:113857978	956.436

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