Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2281 ATGGGTAATTGCTGGTATAGGTGGGAGTCATCAGATTATAGAGTCTCATCCAATGCAAAATCAGAACAAAACCAGGCAACGAAACAAAGGAATGATGATAGTAAATTACCATCGAATCCTGAAGAAGTAGAAGACCTAAGGCGTGACTCAGCTGCAAATCCGTTGATTGCATTCACTTATGATGAGCTTAAAATAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGTGGAGGAGGATTTGGAAGTGTTTATAAAGGGTTTATTTCTGAGGAGTTAAGGCAGGGCCTTCCTACTCTTGCAGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGGCACAGAGAGTGGCTGGCAGAGGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAATTAATTGGATACTGCTGCGAAGACGAGCATAGGGTACTAATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAATTTGTTCTCCAAAATTCTGCTTCCCATGCCATGGTCCATAAGAATGAAGATTGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATCTATCGTGATTTTAAGACATCAAATATTTTATTGGACCAGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCTAAGGATGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGAATAATGGGAACATATGGTTATGCAGCACCTGAATACATAATGACAGGTCATCTAACTCCTAGAAGTGATGTATACAGTTTTGGTGTTGTTCTTCTTGAACTTCTCACAGGAAGAAAATCTTTAGAGAAGTTAAGGCCGGCTAGAGAGCAGAACCTTGCAGAATGGGCTCTTCCTTTGCTGAAGGAAAAGAAGAAGTTTCTAAACATTATAGATCCAAGGCTGGATGGTGATTATCCAGTTAAGGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTAATGCGAGATATTGTAGATTCATTGGAGCCTTTGCAGGCACACAATGAGATCTCTATTGAAAAAACATTGACCATAATCAGTGAGGTTCCTGATGCTGATTTGAAAAGGAAAGATGCAAAATGA 1143 0.4112 MGNCWYRWESSDYRVSSNAKSEQNQATKQRNDDSKLPSNPEEVEDLRRDSAANPLIAFTYDELKIITANFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLEKLRPAREQNLAEWALPLLKEKKKFLNIIDPRLDGDYPVKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAHNEISIEKTLTIISEVPDADLKRKDAK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2281 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Apr3g2281 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Apr3g2281 380 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Apr3g2281 380 PANTHER OS01G0588500 PROTEIN-RELATED 10 361 - -
Apr3g2281 380 CDD STKc_IRAK 76 351 - -
Apr3g2281 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 361 - -
Apr3g2281 380 SUPERFAMILY Protein kinase-like (PK-like) 46 348 IPR011009 -
Apr3g2281 380 Gene3D Transferase(Phosphotransferase) domain 1 154 370 - -
Apr3g2281 380 MobiDBLite consensus disorder prediction 26 46 - -
Apr3g2281 380 ProSiteProfiles Protein kinase domain profile. 70 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2281 380 Gene3D Phosphorylase Kinase; domain 1 30 153 - -
Apr3g2281 380 MobiDBLite consensus disorder prediction 12 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2281 Apr-Chr3 38437566 38442731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2281 3 363 Glycoside Hydrolase AT3G07070 44.330 9.97e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr3g2281 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2281 - - gmx:100775722 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2281 3 38437566 38442731 Apr3g2281 3 38437566 38442731 ECH