Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2278 ATGGCACTTTCTATGCACACAGATTCTTCATCAAATAAGCACATGGATTCTAGCAAGTATGTGAGGTATACACCTGAACAAGTGGAAGCTTTGGAGAGAGTGTATGCTGAATGTCCCAAGCCATGTTCTTCTAGAAGGCAACAACTCGTTAGGGAGTGCCCCATCCTTGCTAATATTGAACCAAAACAGATCAAAGTGTGGTTTCAGAATCGCAGATGTCGGGAAAAGCAGCGAAAGGAAGCCTCTCGTCTGCAGACAGTTAATAGAAAGCTGACTGCAATGAATAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAACAGGTCTCACAGTTGGTTTATGAAAATGGATACATGAAACAACAAATACAGACTGCATCTACTACTACAGACAATAGCTGTGAGTCTGTAGTAATGAGTGGTCAGAATCAACAGCAAAACCCAAAAATGTCCCACCCCCAGTGGGATGCCAACAATCCAGCTGGTCTTCTCTCAATTGCTGAGGAGACCCTGACAGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCATCGCTGTTTCCCGCAACTGTAGTGGGATAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGATCCCACGAAGGTAGCCGAGATTCTTAAAGATCGCCCATCTTGGTATCGTGACTGTCGATGCCTCAATGTATTGAGCATAGTCCCCACAGGAAATGGGGGTACAATAGAGCTCATGTACATGCAGACTTATGCACCTACAACATTGGCAGCAGCAAGAGATTTCTGGACAATAAGATACACTACAAGTTTAGAAGATGGAAGTCTTGTGATTTGTGAGAGATCCTTGACTTCCTCAACTGGTGGCCCCTCAGGGCCTTCTGCATCAAACTTCGTAAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGATGGTGGTGGATCTATTGTTCACATTGTTGATCACGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCACTCTATGAATCATCAAAATTCTTGGCTCAGAAATTGACTACTGCTGCCCTGCGACATGTGAGACAAATTGCTCAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGTCGTCAGCCTGCTGTGTTGAGGACATTTAGTCAGAAACTTTGCAGAGGGTTCAATGATGCTGTCAATGGATTTGTGGATGATGGTTGGTCCCTGATAAGTAATGATGGGGTGGAAGATGTGACCTTAGCCATAAACTCTTCTCTTAACAAGTTTTTTGGCTCCCATTACAATTCATCAATGCTTCCAGCCTTTGGAGGTGGGGTCCTGTGTGCCAAGGCATCGATGCTGTTGCAGAATGTTCCTCCCCCATTGCTTGTTCGTTTTTTGAGGGAGCATCGTTCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCAGCTTGTCATAAGGCTAGTCCTTATGCAGTTCCTTGTGCTAGACCCAGTGGCTTCCCCAGCAGCCAGGTCATTTTACCACTGGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATTGAGGGTCATGCATTTTCTCCTGAAGATGTGACTTCGGCACGTGATATGTTTCTACTGCAGCTGTGCAGTGGAGTTGATGAAAATGCTATTGGAGCATGTGCACAGCTTGTGTTTGCGCCTATTGATGAATCATTTGCGGATGACGCTCTCTCACTGCCTTCTGGTTTCCGTGTCATACCGTTGGATACAAAAGCAGATGGTCCAGCTTCAAGTAGAACATTGGATTTAGCATCATCGCTGGAAATAGGATCTGGTAATACTCGTCCAGCTGGTGAAGGTGATTTGAATGACTACAATATTAGATCAGTCCTTACAATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGTTATGGCCCGCCAATATGTGCGTAGTGTTGTGCGGTCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTCGACTCAGTACCCAGTTGGGGCCAAAATCACTTCCTGGTCCACCAGAGGCTCTTACTTTAGCCCGATGGATCTGTACAAGCTACAGGATCCTCACCTGCACAGAGCTTTTTCGAGTAGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAATATTGTGTTGTTCTGTTAAGACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTCGACATGCTTGAAACCACCCTAGTTGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGAAGAAAGATTCTCTGCATTGAGTTCTCCAAAATAATGCAACAGGGGTTTGCATATCTGCCAGCAGGAATGTGTGTGTCCAGTATGAATAGACCAGTGTCCTATGAGCAAGCAATTGCATGGAAAGTTTTGGATGATGATGATTCCAATCACTGCTTAGCCTTCATGTTCATGAATTGGTCGTTTGTCTAA 2538 0.4519 MALSMHTDSSSNKHMDSSKYVRYTPEQVEALERVYAECPKPCSSRRQQLVRECPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMKQQIQTASTTTDNSCESVVMSGQNQQQNPKMSHPQWDANNPAGLLSIAEETLTEFLSKATGTAVNWVQMIGMKPGPDSIGIIAVSRNCSGIAARACGLVSLDPTKVAEILKDRPSWYRDCRCLNVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTIRYTTSLEDGSLVICERSLTSSTGGPSGPSASNFVRAEMLPSGYLIRSCDGGGSIVHIVDHVDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQKLCRGFNDAVNGFVDDGWSLISNDGVEDVTLAINSSLNKFFGSHYNSSMLPAFGGGVLCAKASMLLQNVPPPLLVRFLREHRSEWADYGVDAYSAACHKASPYAVPCARPSGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVTSARDMFLLQLCSGVDENAIGACAQLVFAPIDESFADDALSLPSGFRVIPLDTKADGPASSRTLDLASSLEIGSGNTRPAGEGDLNDYNIRSVLTIAFQFTFENHLRDNVAVMARQYVRSVVRSVQRVAMAIAPSRLSTQLGPKSLPGPPEALTLARWICTSYRILTCTELFRVESTAGDAILKQLWHHSDAILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCIEFSKIMQQGFAYLPAGMCVSSMNRPVSYEQAIAWKVLDDDDSNHCLAFMFMNWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2278 845 SUPERFAMILY Bet v1-like 165 377 - -
Apr3g2278 845 Coils Coil 88 115 - -
Apr3g2278 845 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g2278 845 CDD bZIP 71 110 - -
Apr3g2278 845 CDD homeodomain 19 79 IPR001356 GO:0003677
Apr3g2278 845 SUPERFAMILY Homeodomain-like 18 81 IPR009057 -
Apr3g2278 845 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Apr3g2278 845 MobiDBLite consensus disorder prediction 1 18 - -
Apr3g2278 845 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Apr3g2278 845 Gene3D - 9 85 - -
Apr3g2278 845 CDD START_ArGLABRA2_like 160 376 - -
Apr3g2278 845 Pfam MEKHLA domain 700 844 IPR013978 -
Apr3g2278 845 Pfam START domain 166 374 IPR002913 GO:0008289
Apr3g2278 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 845 IPR044830 GO:0003700
Apr3g2278 845 Gene3D - 192 377 IPR023393 -
Apr3g2278 845 SMART HOX_1 16 82 IPR001356 GO:0003677
Apr3g2278 845 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Apr3g2278 845 SMART START_1 165 375 IPR002913 GO:0008289
Apr3g2278 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2278 Apr-Chr3 38407775 38414366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2278 1 845 Homeobox Transcription Factor Family AT2G34710 77.176 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g2278 START 2.6e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2278 K09338 - gmx:100807637 1515.75