Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2276 ATGACCTCTGCTCATGACCTTACTGATAATGAAGATGATGGGCAGCAGCAGTCAGAATCACAAATGCAGTCCTCATCTGCAAATGGAATTTCTGATCCAGGTATTGGTACGCAGACAGTTCAGTATGCAACACCTGGCCAGCTTGGAACTGGGCATGCTATGGTACCACCTGTGTATCCATATCCAGATCCTTACTACAGAAGCATCTTTGCGCCCTATGATACACAATCTTATCCCCCACAAACCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAACAATATCACGGTATATTAAGGCGTAGACAATCGCGTGCCAAAGCTGAATCAGAAAATAAAGTTATAAGAAATCGGAAGCCATACTTGCATGAATCTCGACACTTGCATGCACTGAGAAGAGCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAAATGATGATCAACATGATGATGTGGCATCACCAGATAAATCACAATCGAATATCAATCTCAATTCTGATAAAAGTGATCTTACTTCGTCAGATAGGACATCCTAA 615 0.4276 MTSAHDLTDNEDDGQQQSESQMQSSSANGISDPGIGTQTVQYATPGQLGTGHAMVPPVYPYPDPYYRSIFAPYDTQSYPPQTYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKNDDQHDDVASPDKSQSNINLNSDKSDLTSSDRTS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2276 204 MobiDBLite consensus disorder prediction 162 204 - -
Apr3g2276 204 MobiDBLite consensus disorder prediction 1 43 - -
Apr3g2276 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 187 IPR001289 GO:0003700|GO:0006355
Apr3g2276 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Apr3g2276 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Apr3g2276 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Apr3g2276 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Apr3g2276 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 187 - -
Apr3g2276 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Apr3g2276 204 Gene3D - 108 169 - -
Apr3g2276 204 MobiDBLite consensus disorder prediction 181 198 - -
Apr3g2276 204 MobiDBLite consensus disorder prediction 166 180 - -
Apr3g2276 204 MobiDBLite consensus disorder prediction 14 43 - -
Apr3g2276 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2276 Apr-Chr3 38391088 38397074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2276 2 204 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.537 1.94e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr3g2276 CBFB_NFYA 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2276 K08064 - gmx:100499754 365.925