Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2274 ATGAAACATAATGGAGTTGTAAAACAACCAGGATCCAGTAAAAGAAGATTGAAGGATTTATTGGTTCAAAAAGATAATCGCTTCTGTGCTGATTGTAATTCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAAGATTTTGTCTGTGACATTGGATGACTGGTCAACTGATGAAATAGATGGAATGATTGAAGTTGGAGGAAATTCTTCTGCCAATTCAATTTATGAGGCTTATATTCCAGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGGAGCGTGCAAAATTCATCCGATCAAAGTATGAGCAACAAGAATTTTTGAAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAATACCTCATCAAGTTTTTCCAAAGGGATTGTGGTTGGTTTTCGAAGTACTAGTAGTTCACAGAATATGGAAGGAATGGTAGAATTTATTGGAACGTTGAAGGTTAAAGTGATCAAAGGCACAGACTTAGCTATCAGAGATATAATGACAAGTGATCCATATGTTATCTTGAATCTTGGCCAACAGATTGTTCAGACAACGGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTGTGCTGTCCGTACCTCAGCAATATGGAATATTAAATTTGAAAGTGTATGATCATGACTTGTTTTCAGCTGATGATATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATTACATCTGCTTTGGCATTTGGAGATGCTGGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCCATGACAATGCACTTATAGATGATAGCTCAGTCAATATTATTGATGGTAAGGTTAAACAAGAGATGTCACTTAAGCTCCAAAACGTCGAATGTGGAGAATTAGACTTAGAACTCGAGTGGATACCCCTTGTTCATTAG 984 0.375 MKHNGVVKQPGSSKRRLKDLLVQKDNRFCADCNSPDPKWASANIGVFVCLKCCGVHRSLGTHISKILSVTLDDWSTDEIDGMIEVGGNSSANSIYEAYIPEGYTKPGPDASHEERAKFIRSKYEQQEFLKPSLRIVSGKSNTSSSFSKGIVVGFRSTSSSQNMEGMVEFIGTLKVKVIKGTDLAIRDIMTSDPYVILNLGQQIVQTTVIKSNLNPVWNEELVLSVPQQYGILNLKVYDHDLFSADDIMGEADIDLQPLITSALAFGDAGMFDDMQIGKWLKSHDNALIDDSSVNIIDGKVKQEMSLKLQNVECGELDLELEWIPLVH* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2274 327 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 325 IPR044518 GO:0005096|GO:0005543
Apr3g2274 327 ProSiteProfiles C2 domain profile. 151 268 IPR000008 -
Apr3g2274 327 CDD C2_ArfGAP 170 314 - -
Apr3g2274 327 Pfam C2 domain 171 261 IPR000008 -
Apr3g2274 327 SUPERFAMILY ArfGap/RecO-like zinc finger 14 131 IPR037278 -
Apr3g2274 327 Pfam Putative GTPase activating protein for Arf 15 130 IPR001164 GO:0005096
Apr3g2274 327 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 169 324 IPR035892 -
Apr3g2274 327 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 325 - -
Apr3g2274 327 Gene3D C2 domain 169 326 IPR035892 -
Apr3g2274 327 CDD ArfGap 17 123 - -
Apr3g2274 327 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 128 IPR001164 GO:0005096
Apr3g2274 327 SMART arf_gap_3 15 136 IPR001164 GO:0005096
Apr3g2274 327 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Apr3g2274 327 SMART C2_3c 172 267 IPR000008 -
Apr3g2274 327 PRINTS HIV Rev interacting protein signature 26 45 IPR001164 GO:0005096
Apr3g2274 327 PRINTS HIV Rev interacting protein signature 45 62 IPR001164 GO:0005096
Apr3g2274 327 PRINTS HIV Rev interacting protein signature 66 87 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2274 Apr-Chr3 38372571 38381171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2274 1 325 C2H2 Transcription Factor Family AT4G21160 70.746 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2274 K12486 - gmx:100777084 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2274 3 38372571 38381171 Apr3g2274 3 38372571 38381171 ECH