Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2251 ATGCCTCGTAAAGTAAACTATGGACTCGATTACTACGACGATGACTATGATGACTATGACGACTATGATTATGATGTTGACGCAGAAGACTATGCTGGAGGACAGGATACAAAACAAGAGACCATTAAGCCCGGGGTTTGGCAATGCCCCATTTGCACTTATGACAATGATGAGAGTATGACTATGTGCGATATTTGTGGTGTTTTACGTCGTTCCATGCTTAACACTGGAACTTCCAACAGTAACAAAATAGTTGAAGACACAAGCAACAGTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTGCCACCACAGACTTCCAAAGAGGTTGTATTATTTCCAAAGCAGGGTGATGGTTTTCAGACAGATGGCAGTAACTTCGACAAGCTTGAGAATGTCCGAGGAGAATTTCATGAAATTCACAAGACTTTTAGTACTCAAAGCCATCCCCATCTAACCATAGATCCTTTCAAGTTTGATGTTCCATCCCCTGATGATGTGGTTTATACTGGCCTGCATTCATCCAAAATGGGTTCGAAAGACAAAGTTATGAACACTAAAACTTCTCAGCTTTCCTCAAACATCAGAGAGAAGAATGAACTTCCTGTACAGTCAAATGTTGAAAGTTTAGACAACTTATCATCCTTAATGCGAAAGAGCAGGCAGGATAGTTCGGCTGAGAACATGCTTTCCAAAAATGTAGCAATTGATCTGCAGACAAGGGGTAAAACTTCAAAGAGCTTGCCAGAATCTTTGCCAAAGGACAAAGGTCACAATATTAATAAGATAAATTCTTCTAAAAATGGTACAATTGATATTCAATCAAGCAAAAAAAGTGATACGGTTAGTCCCTCTTCTATCAAAGATGGAAAACCTGAAAGTTCTTCAAGCAGTATCGACAACATGGTTCTCGATGTGAGATCTGGAACTTCAGAAAATACTAATGCTAAGGGACATCGTTCACAAGTTTCATATAAGCTAGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGCAGGTTACTACACCTACTGGGACGGATTTCCCAGAAAGAGATGCACAAATATGAAAAGGAGGCCAAATTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAACGGGGAATAACTATGACAGTGGCTGTTGCATATTTTGACACTAAGAAATATCATGTTGTTGTGCTAGACTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGTCAAACAAGGGAGCATGCACAATTAATCAGAAGCTTTGGTGTTGACCAGGTTATAGTTGCAGTAAATAAGATGGATGCTGTGGCATACTCCAAAGATCGATTTGATTTTATAAGGCAGCAGCTAGGAGTTTTTCTTCGCTCATGTGGGTTCAAAGATTCTTCTCTGTCATGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATGCTCATTTCAAAAGCTGGTGTAGTGGACCTTATCTGTTAGATGCAATTGACTCTCTCCAACCTCCTACCAGAGAATTCTCAAAACCACTACTAATGCCAATATGTGATGTCATCAAATCAACTACACTTGGACAGGTGTCTGCTTGTGGTAAGCTGGAAGCAGGAGCTCTTCGAAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCTTTGGAGCGTGACTCTAATTCATGCACCGTTGCAAGAGCTGGAGATAATGTAGCTGTAACACTGCAAGGTGTTGATGGAAGTCATGTAATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGTTGTAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTCCTGGATGGTGCAAGTCCCATATTGGTGGGCGCTCAGTTAGAGTTTCATATACACCATGCTAAGGAACCTGCAAAAGTTTCAAGAATATTATCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAATCGCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATAGAGGTGATTTTACTTGAGCCGGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTGAGATCATTGGGAAGAACAATCGCTGTTGGACTTGTGACGAGAGTAATTGAAGAACAAGGTTAA 2325 0.4172 MPRKVNYGLDYYDDDYDDYDDYDYDVDAEDYAGGQDTKQETIKPGVWQCPICTYDNDESMTMCDICGVLRRSMLNTGTSNSNKIVEDTSNSPGASKLARSLFQSLPPQTSKEVVLFPKQGDGFQTDGSNFDKLENVRGEFHEIHKTFSTQSHPHLTIDPFKFDVPSPDDVVYTGLHSSKMGSKDKVMNTKTSQLSSNIREKNELPVQSNVESLDNLSSLMRKSRQDSSAENMLSKNVAIDLQTRGKTSKSLPESLPKDKGHNINKINSSKNGTIDIQSSKKSDTVSPSSIKDGKPESSSSSIDNMVLDVRSGTSENTNAKGHRSQVSYKLEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDAVAYSKDRFDFIRQQLGVFLRSCGFKDSSLSWIPMSAMENQNLVASPSDAHFKSWCSGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNSCTVARAGDNVAVTLQGVDGSHVMAGGVLCHPDFPVVVAKHLELKVLVLDGASPILVGAQLEFHIHHAKEPAKVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILLEPVCVVEFSSCKALGRVSLRSLGRTIAVGLVTRVIEEQG* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2251 774 Gene3D Translation factors 571 660 - -
Apr3g2251 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 588 IPR027417 -
Apr3g2251 774 PANTHER OS04G0595300 PROTEIN 52 772 - -
Apr3g2251 774 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 666 770 IPR009001 -
Apr3g2251 774 Gene3D - 39 80 - -
Apr3g2251 774 SMART zf_4 45 69 IPR001876 -
Apr3g2251 774 SUPERFAMILY Ran binding protein zinc finger-like 45 70 IPR036443 -
Apr3g2251 774 PRINTS GTP-binding elongation factor signature 347 360 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 PRINTS GTP-binding elongation factor signature 406 414 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 PRINTS GTP-binding elongation factor signature 426 436 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 PRINTS GTP-binding elongation factor signature 442 453 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 PRINTS GTP-binding elongation factor signature 487 496 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 Pfam Elongation factor Tu C-terminal domain 662 769 IPR004160 -
Apr3g2251 774 ProSiteProfiles Zinc finger RanBP2 type profile. 43 72 IPR001876 -
Apr3g2251 774 PANTHER TRANSLATION FACTOR 52 772 - -
Apr3g2251 774 ProSitePatterns Zinc finger RanBP2-type signature. 47 66 IPR001876 -
Apr3g2251 774 MobiDBLite consensus disorder prediction 219 250 - -
Apr3g2251 774 MobiDBLite consensus disorder prediction 219 304 - -
Apr3g2251 774 SUPERFAMILY Translation proteins 565 660 IPR009000 -
Apr3g2251 774 CDD EF1_alpha 347 566 - -
Apr3g2251 774 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 343 574 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 Gene3D Translation factors 664 773 - -
Apr3g2251 774 MobiDBLite consensus disorder prediction 265 304 - -
Apr3g2251 774 CDD HBS1_C_III 661 769 - -
Apr3g2251 774 Pfam Elongation factor Tu GTP binding domain 346 562 IPR000795 GO:0003924|GO:0005525
Apr3g2251 774 Gene3D - 332 567 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2251 Apr-Chr3 38221160 38233434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2251 45 82 Eukaryotic Initiation Factors Gene Family AT5G10630 55.263 1.86e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2251 K14416 - gmx:100801724 1300.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1643 1 26112555 26116046 Apr3g2251 3 38221160 38233434 PCT