Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2250 ATGCCAGGGAACAACTATAACTGCATCCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGATAGAGAGCTAAGGAAAACCTTCAGATATATTCCACCAACCGAGGAAGCAAGAGATGGCAACAAAGAGGGAGAACAATGCTTAAGTGAGAATGAAGTTTCAGGAATTCATAATGAGGAGGAGGTCACGGAAACGATTGCAGATGCAAGAGGTTTTACTGATAGAAGTCAAAGGCAAGATGAAAGGCCAAACAAACAACGTTTGTTGGTAGTAGCTAACAGGTTGCCTGTGTCTGCTGTTAGGGAGGGTGTGGACTCATATCACCTTCAGATCAGTGTAGGAGGGCTAGTCAGTGCACTTCTAGGTATAAAGGAGTTTGACACAAGATGGATTGGGTGGGCTGGTGTAAATGTGCCTGATGATGTTGGTCAGAAAGCATTGACTAAAGCTTTAGCTGAAATGAGGTGCATCCCAGTATTTCTAGATGAGGAGATAGTTAATCAATACTATAATGGTTACTGCAACAACATCTTATGGCCTCTATTTCATTACCTTGGACTTCCACAAGAAGATCGACTTGCAACCACCCGCGGTTTCCAATCTCAATTTGATGCATATAAGAGAGCAAACCAAATGTTTGCTGATGTTGTAAATAAGCATTACGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACTTAATGTTCCTTCCAAAATGTTTAAAAGAATACAATGACAAAATGAAAGTTGGCTGGTTCCTCCATACACCCTTCCCTTCCTCAGAAATACATAGAACTCTTCCATCAAGATCAGATCTGTTGAGATCTGTACTTGCTGCTGACTTGGTGGGATTCCATACTTACGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGACTTGAAGGTACACCTGAAGGAGTAGAAGATCAAGGGGAGCTTACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGATCGATTTATTCAAGCCCTTGAACTCCCTGAAGTTCAGGATCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGCAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATAAAAGGCATTCCCCAGAAAATCTTGGCATTTGAAAAGTTCCTTGAGGAGAATTCACACTGGCGCGATAAAGTTGTATTGCTGCAAATTGCTGTTCCTACCAGGACAGATGTTCCTGAATATCAAAAGCTTACGAGCCAGGTGCATGAAGTTGTTGGACGCATCAACGGAAGATTTGGAACACTAACTGCCGTCCCAATACACCATCTGGACCGGTCACTTGACTTCCATGAATTATGTGCACTATATGCTGTTACCGATGTAGCACTTGTGACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCATGTCAAGCTTCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCAGGCGCAGCACAGTCTCTTGGCGCTGGTGCTATCTTGGTAAATCCATGGAACATCACAGAGGTTGCTGCTTCTATTGGTTATGCTTTGGATATGCCGGCTGATGAAAGAGAAAAACGGCATCAGTTTAATTTCAAGCATGTGACGACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGTGAACTGAATGATTCCATTGTTGAAGCTCAGCTAATGACAAGACAAGTTCCTCCAGTACTTCCTAACAAAGTGGCAGTTGACTGTTACTCAAAATCCAATAACCGGTTAATCATACTGGGTTTCAATGCCACATTGACTGAACCAGTGGATGCCCTTGGAAGAGGTGGTCAAATCAGAGAACTGGAACTTAAATTGCACCCAAATCTGAAGGAATCTTTAAAGAAGTTGTCTGATGATCCAAAGACAACAATAGTTGTTCTGAGTGGGAGTGATAGAGCTGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCAGAAAATGGGATGTTTTTGCGATGTACTTCAAGTGAGTGGATGACAACTATGCCTGAAAATTTAAACATGGATTGGGTTGATAGTGTGAAGCATGTTTTTGAGTATTTTACTGAAAGAACTCCACGGTCTCATTTTGAGCTTCGTGAGACTTCAGTTATATGGAATTACAAGTATGCAGATGTTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAGCATCTATGGACAGGGCCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCAGTTGAGGTCCGGGCTGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTGGGAGAGATAGTTCACAACAAAGGCATGAAGGCACCAATTGATTATGTCCTATGCATTGGACACTTTCTACCAAAGGATGAAGATGTCTATAAATTTTTTGAGCCAGACCTCCCTTCTGAATCATCTTCAATACCTATGTTATCCAAATCCAAGTCTTACAGGCCATCAAATTTGCCAAAGTTTACAGCCAGCAAAACTGGATCTAAGGCAATCCGCTACAAGAAACAACGTTCATTATCAAATATAGAAAGGAGACAAATTGATCATGCAAGTGGTGATCCTTGGAGAGCAACATATTGTGACAGAATATCACCACATGAGGGTTCTTCAGTGCTTGATCTAAGAGGTGATAACTACTTCTCTTGTGCTGTTTCACGAAAAAGATCAAACGCACGCTACCTTCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGACTTGGCAGATCATGCTTCATCACCAACAACTTAA 2784 0.4185 MPGNNYNCIPLTPRSRLERLLRDRELRKTFRYIPPTEEARDGNKEGEQCLSENEVSGIHNEEEVTETIADARGFTDRSQRQDERPNKQRLLVVANRLPVSAVREGVDSYHLQISVGGLVSALLGIKEFDTRWIGWAGVNVPDDVGQKALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFDAYKRANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRSDLLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGELTRVAAFPIGIDSDRFIQALELPEVQDHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEVVGRINGRFGTLTAVPIHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFKHVTTHTSQEWAATFVSELNDSIVEAQLMTRQVPPVLPNKVAVDCYSKSNNRLIILGFNATLTEPVDALGRGGQIRELELKLHPNLKESLKKLSDDPKTTIVVLSGSDRAVLDKNFSEFNMWLAAENGMFLRCTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSVIWNYKYADVEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRAVGVSKGAAIDRILGEIVHNKGMKAPIDYVLCIGHFLPKDEDVYKFFEPDLPSESSSIPMLSKSKSYRPSNLPKFTASKTGSKAIRYKKQRSLSNIERRQIDHASGDPWRATYCDRISPHEGSSVLDLRGDNYFSCAVSRKRSNARYLLKTSDDVVNLLSDLADHASSPTT* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2250 927 Gene3D - 678 758 - -
Apr3g2250 927 Gene3D - 614 772 IPR023214 -
Apr3g2250 927 CDD HAD_TPP 587 806 - -
Apr3g2250 927 SUPERFAMILY HAD-like 586 911 IPR036412 -
Apr3g2250 927 Gene3D Glycogen Phosphorylase B; 80 335 - -
Apr3g2250 927 CDD GT20_TPS 89 554 IPR001830 GO:0003824|GO:0005992
Apr3g2250 927 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 47 918 - -
Apr3g2250 927 Pfam Trehalose-phosphatase 614 829 IPR003337 GO:0003824|GO:0005992
Apr3g2250 927 Gene3D Glycogen Phosphorylase B; 336 538 - -
Apr3g2250 927 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 556 - -
Apr3g2250 927 Pfam Glycosyltransferase family 20 89 554 IPR001830 GO:0003824|GO:0005992
Apr3g2250 927 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 47 918 IPR001830 GO:0003824|GO:0005992
Apr3g2250 927 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 89 554 IPR012766 GO:0003825|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2250 Apr-Chr3 38201679 38208885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2250 1 925 Trehalose Biosynthesis Gene Families AT1G78580 74.530 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2250 K16055 - gmx:100816642 1659.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2250 3 38201679 38208885 Apr3g2250 3 38201679 38208885 ECH