LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g2247	ATGGCTTTTCCAAACCAATCCATGTCATCAGTTTCACCACAGAGAAGGATGGGAAGGGGAAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGTCAAGTAACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTTCTTTGTGATGCAGAGGTTGCTCTAATAGTCTTTTCAAGCCGTGGCCGCCTCTATGAATATGCAAATAACAGCGTCAAAGCATCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAACGGCAAGTCCGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCTGCCAAATTGCGAGTGCAAATCAGCAATCTACAAAATCACAACAGGCAAATGATGGGTGAGACTTTGAGTAATATTAATGCCAAGGACCTCAAAAACCTGGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCTAAAAAGAATGAGTTGCTATTTGCAGAAATTGAGTACATGCAAAAGAGGGAGATAGACTTGCAGAATAATAACCAGCTTCTTAGAGCAAAGATAGCAGAAAGTGAGAGGAGCCACCACAACGATAACGTGTTACCTGGAGGCACAAACTATGAATCCATGCAATCTCAGTTTGACTCTCGTGGCTACTTCCAAGTTACTGGATTACAACCCAATAATCACTATGCCAGGCAAGACCACACGTCCCTTCAATTTGTGTAA	726	0.4174	MAFPNQSMSSVSPQRRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKASSDSSNGKSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGETLSNINAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLQNNNQLLRAKIAESERSHHNDNVLPGGTNYESMQSQFDSRGYFQVTGLQPNNHYARQDHTSLQFV*	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g2247	241	SUPERFAMILY	SRF-like	18	90	IPR036879	GO:0003677\|GO:0046983
	Apr3g2247	241	MobiDBLite	consensus disorder prediction	1	20	-	-
	Apr3g2247	241	CDD	MADS_MEF2_like	18	94	IPR033896	GO:0000977\|GO:0045944
	Apr3g2247	241	ProSiteProfiles	K-box domain profile.	103	193	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Apr3g2247	241	Pfam	K-box region	100	187	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Apr3g2247	241	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	73	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	Coils	Coil	140	160	-	-
	Apr3g2247	241	Gene3D	-	29	111	IPR036879	GO:0003677\|GO:0046983
	Apr3g2247	241	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	PANTHER	AGAMOUSB	11	235	-	-
	Apr3g2247	241	PANTHER	MADS BOX PROTEIN	11	235	-	-
	Apr3g2247	241	ProSitePatterns	MADS-box domain signature.	19	73	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Apr3g2247	241	Coils	Coil	96	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g2247	Apr-Chr3	38178462	38184823	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g2247	15	241	MADS-box Gene Family	AT3G58780	65.532	7.28e-106	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Apr3g2247		K-box	5e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g2247	K09264		-	gmx:732595	399.823

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g2247	3	38178462	38184823	Apr3g2247	3	38178462	38184823	ECH
	Apr3g2247	3	38178462	38184823	Apr1g1585	1	25416785	25423864	PCT