Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2243 ATGAATTGGACAGGTACAGAAGGAGGACGATATTCTCTGAAGGGGACATTTACGTTAAAACAAATTAGAGCTGCCACAGATGATTTTAGTCCTGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGGTTGCAGTCAAACAACTCTCGTCAAAGTCCCGACAGGGAAACCGTGAATTCTTAAATGAGATAGGCGTGATATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTGATATTGGTATATGAGTACATGGAAAATAATAGCGTGGCCCGTGCTTTATTCAGCTCAGAAAATCAGCTTAAACTTGACTGGCCAACAAGGCTTAGAATCTGTATTGGGATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGATATCAAAGCAACTAATGTGTTGCTGGACGGGAATTTAAACCCTAAAATATCAGACTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATGTCACCACCCGAGTGGCAGGGACAATAGGATATATGGCAACAGAATATGCATTATGGGGTCACCTAACTTACAAGGCTGATATTTATAGTTATGGAGTTGTGGTCTTGGAAATTGTTAGTGGGAAGAATAATAACAGTTACATGCCAAGCGATAATTGTGTTTGCCTTTTAGACAATGCATATCATCTGCAGCATACTGAAAAATTAATAGAACTGGTGGATGAAAAGTTGGGAGCAGCGGTAAACCCAATTGAAGCAATAAAGTTGATGAAAGTAGCTCTCATATGCACAAATGCATCGCCGTCACTGAGGCCTACAATGTCTGATGTTGTAAACATACTTGAAGGAAGAATGAGCATTCCAGATACTATCCCAGAACCAAGTGCTTTTAGTGAGGATCTGAGGTTTAAAGCCACGAGGGACATCCATCAACAAAGAGAAATTCATAGTTTGAGCACAAGCAAAACAGACAATTCAACAGGACTCCTTACACTTAGCTCTACCTCAGCATTTGGCAATGATATACATGAGATATGCTCAGAACCGTAA 1104 0.4049 MNWTGTEGGRYSLKGTFTLKQIRAATDDFSPANKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIGVISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSVARALFSSENQLKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHVTTRVAGTIGYMATEYALWGHLTYKADIYSYGVVVLEIVSGKNNNSYMPSDNCVCLLDNAYHLQHTEKLIELVDEKLGAAVNPIEAIKLMKVALICTNASPSLRPTMSDVVNILEGRMSIPDTIPEPSAFSEDLRFKATRDIHQQREIHSLSTSKTDNSTGLLTLSSTSAFGNDIHEICSEP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2243 367 CDD STKc_IRAK 35 301 - -
Apr3g2243 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 305 - -
Apr3g2243 367 ProSiteProfiles Protein kinase domain profile. 29 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2243 367 Gene3D Transferase(Phosphotransferase) domain 1 105 308 - -
Apr3g2243 367 Pfam Protein tyrosine and serine/threonine kinase 33 299 IPR001245 GO:0004672|GO:0006468
Apr3g2243 367 SMART serkin_6 29 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2243 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Apr3g2243 367 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Apr3g2243 367 SUPERFAMILY Protein kinase-like (PK-like) 14 300 IPR011009 -
Apr3g2243 367 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 15 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2243 Apr-Chr3 38155793 38157574 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2243 15 332 Receptor kinase-like Gene Family AT1G53440 64.706 1.62e-142 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr3g2243 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2243 - - aprc:113858880 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2243 3 38155793 38157574 Apr3g2243 3 38155793 38157574 ECH