Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2240 ATGCTACTTAGGCCCTGCTTTCTTTTCCTAGTTCTTCCACTTAGTTGTTTCAGATGGCTCGAATATGCAGAATCCAAACTACCCCAGGAAGAGGTTGATGCTCTTAAAGAAATCACTAGCACAATGGGTGCCACCTATTGGGAGTTTGATAGTGATTCTTGCCACATTAAAATACTGGGATTAACACCAGAGCCACCTAATGGAACTCGAAGCAGCATTGATTGTGATTGCTCTTTTGAAAATAACACCTGTCATGTAGTAAGGATTGTGTTCCAGTTTTACAACCTTCCTGGCATGCTTCCACCTCAGTTGGTTAAGCTTCCTTACCTCAGAGAAGTTGATTTTTCTTTGAACTACCTATATGGTTCGATTCCAAAGGAATGGGGTTCAACGAAACTAACTCTTATCTCTCTATTTGTTAATCATCTGTCAGGGGAAATTCCTAAGGAGTTGGGAAATATTACCACTCTAACATACCTAAACCTTGAAGCAAACCAATTTTCTGGTCTTGTTCCCCCTGAACTTGGAGGTCTATTTAACCTGCGGACTTTGGTTTTATCATCCAATAAATTGTCTGGGAACATACCAGGGACATTTGCTCAATTGCAGAATTTGACAGATTTTAGGGTAAACGATAATAGTTTCAATGGAAAAATACCTCAGTTCATACAGAATTGGAAATTACTTCAAAGACTAGAGATTATTGCAAGTGGACTGGAGGGACCTATCCCATCAAATATATCTCTTTTGAGTAATTTATCTCAATTGAGGATTAGTGACATAAATAGTCCAAGTCAGGATTTTCCTATTTTAAGCAACATGACAGGAATGAGAGAATTGATTTTGAGAAATTGTAATATTACTGGAGAGTTTCCTAGTTACTTCTGGACAATGAAGAGTTTGGAAACATTCGATGTCAGTTTCAATAAGTTGGTTGGGGAAATGCCGGTTGCTGCACATGTGGGGCATCTGAGATTTCTCTTTCTAACTAGCAACATGCTAAGCGGTAAAGTACCAGACTCAATCTTGATGGATGGAAGTAATGTTGATCTTTCTTACAACAACTTCACATGGCAAGGACCTGAGCAACCTGCTTGTGGAAAATACCTGAATTTAAACCTAAACTTGTTTCGGAGCTCCTTAGGGACCAATGCTTTGCAAGGAATTCTTCCATGTTTAAAGACCTTCAACAATTGTCCTAGATATTTACATTGTTTTCATGTTAATTGTGGTGGAGAGGATGTAACAGTGAAGGGAAATGATGAAAGTATTGTTTATGTTGGAGATGGAAATGTGCCAGGTGGTGCTGCTAAATATTTTATTGATTATGAAAATTATTGGGGGTTTAGCAGCACTGGGGACTTCATGGATGATGGTGATTACCAAAATACACGTTACGCTAGGTCTTTGCTGTCTTCAAACATGCCTGAATTATATAAAACGGCTCGTGTTGCTCCAGTCTCACTTACTTATTTTCACTATTGCTTGGAAAATGGAAAATATACTGTAAATCTCCACTTTGCAGAAATACAATTTACAAATGATCATACATATAAAAGTCTTGGGAAGCGGTTATTTGATATTTATCTTCAGGAAATATTAATTAGGAAGGATTTTAATATTGAGGATGAAACACATGCTGCTCAAAAACCATAAGTAACTGACAATATTTTGGAGATTCGATTCTATTGGGCTGGCAAGGGGACTACAAGGATTCCTAATGGTGGAGTCTATGGTCCCCTCGTATCAGCTTTCTCAATTGTTTCTAATTCTAAACCTTGTTTAGACCGAAAAAATGCAAGGCATAAGATACTTGTTGGAGTTGGATTTGGAGTTAGCTCTCTAGGCCTAGTCTTTATCATAGTTGGAATATTTTGGTGGAAAGGCTACATCAAAGGAATAATTACAAGAAAAAATGGTACAGAAGGAGGACGATATTCTCTGAAGGGGACATTTACGTTAAAACAAATTAGAGCTGCCACAGATGATTTTAGTCCTGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGGTTGCAGTCAAACAACTCTCGTCAAAGTCCCGACAGGGAAACCGTGAATTCTTAAATGAGATAGGCGTGATATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTGATATTGGTGTATGAGTACATGGAAAATAATAGCGTGGCCCGTGCTTTATTCAGCTCAGAAAATCAGCTTAAACTTGACTGGCCAACAAGGCTTAGAATCTGTATTGGGATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGATATTAAAGCAACTAATGTGTTACTGGATGGGAATTTAAACCCTAAAATATCAGACTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATGTCACCACCCGAGTGGCAGGGACAATAGGATATATGGCACCAGAATATGCATTATGGGGTCACCTAACTTACAAGGCTGATATTTATAGTTATGGAGTTGTGGTCTTGGAAATTGTTAGTGGGAAGAATAATAACAGTTACATGCCAAGCGATAATTGTGTTTGCCTTTTAGACAAGGCATATCATCTGCAGCATACTGAAAAATTAATAGAACTGGTGGATGAAAAGTTGGGAGCAGCGGTAAACCCAATTGAAGCAATAAAGTTGATGAAAGTAGCTCTCATATGCACAAATGCATCGCCGTCGCTGAGGCCTACAATGTCTGAGGTTGTAAACATGCTGGAAGGAAGAATGAGCATCCCAGATACTATCCCAGAACCAAGTGCTTTTAGTGAGGATCTGAGGTTTAAAGCCATGAGGGACATCCATCAACAAAGAGAAAATCATAGTTTGAGCACAAGCCAAACAGACAATTCAACAGGACTCCTTACACTTAGCTCTACCTCAGCATTTGGCAATGATATACATGAGATATGCTCAGAACCATAA 3009 0.3885 MLLRPCFLFLVLPLSCFRWLEYAESKLPQEEVDALKEITSTMGATYWEFDSDSCHIKILGLTPEPPNGTRSSIDCDCSFENNTCHVVRIVFQFYNLPGMLPPQLVKLPYLREVDFSLNYLYGSIPKEWGSTKLTLISLFVNHLSGEIPKELGNITTLTYLNLEANQFSGLVPPELGGLFNLRTLVLSSNKLSGNIPGTFAQLQNLTDFRVNDNSFNGKIPQFIQNWKLLQRLEIIASGLEGPIPSNISLLSNLSQLRISDINSPSQDFPILSNMTGMRELILRNCNITGEFPSYFWTMKSLETFDVSFNKLVGEMPVAAHVGHLRFLFLTSNMLSGKVPDSILMDGSNVDLSYNNFTWQGPEQPACGKYLNLNLNLFRSSLGTNALQGILPCLKTFNNCPRYLHCFHVNCGGEDVTVKGNDESIVYVGDGNVPGGAAKYFIDYENYWGFSSTGDFMDDGDYQNTRYARSLLSSNMPELYKTARVAPVSLTYFHYCLENGKYTVNLHFAEIQFTNDHTYKSLGKRLFDIYLQEILIRKDFNIEDETHAAQKP*VTDNILEIRFYWAGKGTTRIPNGGVYGPLVSAFSIVSNSKPCLDRKNARHKILVGVGFGVSSLGLVFIIVGIFWWKGYIKGIITRKNGTEGGRYSLKGTFTLKQIRAATDDFSPANKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIGVISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSVARALFSSENQLKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHVTTRVAGTIGYMAPEYALWGHLTYKADIYSYGVVVLEIVSGKNNNSYMPSDNCVCLLDKAYHLQHTEKLIELVDEKLGAAVNPIEAIKLMKVALICTNASPSLRPTMSEVVNMLEGRMSIPDTIPEPSAFSEDLRFKAMRDIHQQRENHSLSTSQTDNSTGLLTLSSTSAFGNDIHEICSEP* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2240 1001 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 66 976 - -
Apr3g2240 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Apr3g2240 1001 Pfam Protein tyrosine and serine/threonine kinase 667 933 IPR001245 GO:0004672|GO:0006468
Apr3g2240 1001 Gene3D Phosphorylase Kinase; domain 1 637 738 - -
Apr3g2240 1001 SUPERFAMILY Protein kinase-like (PK-like) 648 934 IPR011009 -
Apr3g2240 1001 Pfam Malectin domain 405 584 IPR021720 -
Apr3g2240 1001 SUPERFAMILY L domain-like 60 339 - -
Apr3g2240 1001 CDD STKc_IRAK 669 935 - -
Apr3g2240 1001 Gene3D - 404 591 - -
Apr3g2240 1001 Gene3D Ribonuclease Inhibitor 64 194 IPR032675 -
Apr3g2240 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 976 - -
Apr3g2240 1001 ProSiteProfiles Protein kinase domain profile. 663 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2240 1001 Gene3D Transferase(Phosphotransferase) domain 1 739 941 - -
Apr3g2240 1001 SMART serkin_6 663 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2240 1001 Gene3D Ribonuclease Inhibitor 195 265 IPR032675 -
Apr3g2240 1001 Gene3D Ribonuclease Inhibitor 266 371 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2240 Apr-Chr3 38129219 38141408 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2240 7 828 Receptor kinase-like Gene Family AT1G29750 59.521 0.0 1007
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr3g2240 PK_Tyr_Ser-Thr 8.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2240 - - vra:106779815 1483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2240 3 38129219 38141408 Apr3g2240 3 38129219 38141408 ECH