Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2237 ATGGAAGACAATTCAGCAACAAATGAGGTGGTTGTAAATGTAAACAAGGATGTCTCTCAAACAAGAGAAGATTCAGGCACCTATGTTACAGTGTCTTTCTTGCAGAAGTTGGTAGCTGAGGTGATAGGCACATATTTCTTGATATTCGCAGGATGTGCTTCAGTGGTTGTGAACAAAAATAATGACAATGTGGTAACACTTCCTGGGATATCAATTGTTTGGGGTCTGGCTGTGATGGTGTTGGTTTATTCTGTTGGTCACATATCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCCTTTGCCTCCACCAAAAGGTTTCCCTTGAAGCAGGTACCAATTTATGTAGTAGCTCAGGTCCTTGGATCCACACTTGCAAGTGGGACTCTGAGACTAATATTTAGTGGCAAGCATGACCAATTTTCAGGAACACTCCCAGCTGGGTCTTATCTGCAAGCTTTTGTGGTTGAATTCATAATCACTTTTTACCTTATGTTTATCATATCCGGGGTTGCCACCGATAACAGAGCGATCGGTGAGTTGGCCGGGATTGCCGTTGGGTCTACCGTGCTGTTGAATGTGATGTTTGCAGGGCCAATCACAGGGGCATCAATGAATCCCGCAAGAAGCATAGGACCTGCTTTTGTACACAATGAATACAGAGGAATATGGATATATTTGGTGGCTCCAATTCTGGGGGCTGTGGCTGGGGCATGGGTCTACAACACCATTCGGTACACCGATAAGCCATTGCGTGAGATCACAAAGAGTTCCTCTTTCCTCAAAGGAAATGGTGGCTCAAGGTGA 807 0.4498 MEDNSATNEVVVNVNKDVSQTREDSGTYVTVSFLQKLVAEVIGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTIAFASTKRFPLKQVPIYVVAQVLGSTLASGTLRLIFSGKHDQFSGTLPAGSYLQAFVVEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHNEYRGIWIYLVAPILGAVAGAWVYNTIRYTDKPLREITKSSSFLKGNGGSR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2237 268 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 3 264 - -
Apr3g2237 268 TIGRFAM MIP: MIP family channel proteins 39 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 Gene3D Glycerol uptake facilitator protein. 1 256 IPR023271 -
Apr3g2237 268 Pfam Major intrinsic protein 30 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Apr3g2237 268 CDD MIP 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2237 268 SUPERFAMILY Aquaporin-like 30 255 IPR023271 -
Apr3g2237 268 PANTHER AQUAPORIN NIP2-1 3 264 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2237 Apr-Chr3 38112214 38114122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2237 31 262 Major Intrinsic Protein MIP AT5G37810 62.500 1.12e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2237 K09874 - gmx:100794883 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2237 3 38112214 38114122 Apr3g2237 3 38112214 38114122 ECH
Apr3g2237 3 38112214 38114122 Apr1g1573 1 25272841 25275218 PCT