Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2236 ATGCAGTTGGTAGCTGAGGGGGTGGGCACATACTTCTTGCTATTTGCAGGATGTGCTTCAATTGTGGTGAACAAGAACAACGACAATGTGGTCACACTTCCTGGGATCTCAATTGTTTGGGGACTCACAGTGATGGTGTTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCAGTCACCCTTGCTTTTGCCTCCACCAGAAGGTTTCCATTGATGCAGGTACCAGCGTATGTAGCAGCTCAGCTCCTTGGAGGAACACTTGCTAGTGGAACTTTGAAACTAATATTCAGTGGAAGACATGACCAGTTTAGTGGAACACTGCCAAGTGGGTCTAACTTGCAAGCTTTTGTCGTTGAATTCATAATCACTTTTTTCCTTATGTTCGTCATTTCCGGAGTTGCCACAGATAACAGAGCGATTGGTGAGTTGGCTGGGCTTGCAATTGGGTCTACGATACTACTGAATGTGATGATTGCAGGGCCAATCACAGGAGCATCCATGAACCCAGTTAGAAGCTTGGGACCTGCTTTTGTACACACAGAATTCAGGGGAATATGGATATACTTGGTGTCACCGGTTCTGGGGGCCATGGCCGGAGCATGGGTCTACAACATCATCAGGTACACAGATAAGCCATTGCGTGAGATCACTAAGAGTGCCTCTTTCCTCAAAGGATCAGGTCGTAATTAA 702 0.4672 MQLVAEGVGTYFLLFAGCASIVVNKNNDNVVTLPGISIVWGLTVMVLVYSVGHISGAHFNPAVTLAFASTRRFPLMQVPAYVAAQLLGGTLASGTLKLIFSGRHDQFSGTLPSGSNLQAFVVEFIITFFLMFVISGVATDNRAIGELAGLAIGSTILLNVMIAGPITGASMNPVRSLGPAFVHTEFRGIWIYLVSPVLGAMAGAWVYNIIRYTDKPLREITKSASFLKGSGRN* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2236 233 PRINTS Major intrinsic protein family signature 1 20 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 PRINTS Major intrinsic protein family signature 40 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 PRINTS Major intrinsic protein family signature 122 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 PRINTS Major intrinsic protein family signature 153 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 PRINTS Major intrinsic protein family signature 190 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 SUPERFAMILY Aquaporin-like 2 221 IPR023271 -
Apr3g2236 233 CDD MIP 2 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 ProSitePatterns MIP family signature. 58 66 IPR022357 -
Apr3g2236 233 PANTHER NODULIN-26 2 231 - -
Apr3g2236 233 Pfam Major intrinsic protein 2 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 Gene3D Glycerol uptake facilitator protein. 1 222 IPR023271 -
Apr3g2236 233 TIGRFAM MIP: MIP family channel proteins 5 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr3g2236 233 PANTHER AQUAPORIN NIP2-1 2 231 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2236 Apr-Chr3 38106853 38110034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2236 2 228 Major Intrinsic Protein MIP AT5G37810 61.233 2.88e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2236 K09874 - gmx:100813448 399.823