Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2235 ATGATGGATGAAGCACATGGTAGTTCAAGTTCCCTGCCTCCATTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACCGATTCGATTGTTTCGTGGAGTGTTACTAACAAAAGTTTCATTGTATGGAATCCCCCAGACTTTGCAAGGGATTTGCTGCCTAGATTCTTTAAGCACAATAACTTCTCGAGTTTCATTAGGCAGCTCAACACATATGGATTTAGAAAAATTGATCCAGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAATATCCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCATGCACAAATCCCGATAGGGGAGTCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTAAACATGATAAAGAACAACTTCTTATGGAGTTGCAGAAATATCAACACGAGTGGCAAACGTGTGAGATAAAAATACGTTGCTCAAATGATCGGTTGGAAAAGTTGGAACAGAAGCAGGAAGTGATGGTTTCTTCTGTTTCCCAGGTATTGCAAAAATCTGTGATTGCTGTAAATATCTTGCCACTGACTGAAACGTTGGATAGAAAACGAAGGTTGCCGAGAAGTGGCTACTTTAATGATGAAGCTAGTATTGAAGACGCAATTGAAACTTCCCAAACCTTACCTAGAGTAAATGCAGAGAATACCTCAGTTTTGACATTAAACATGGAGCGATTGGATCAGCTTGAATCATCCATGGTGTTTTGGGAGGCTATTGCACATGATGTTGGTGACTCCTTAGTTCAAATTCAGTCAAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCGTCCATATCTTGTGCACAACTAGATGTTGAAGTTCGGCCCAAGTCATCTGGAATTGACATGAACGCAGAGCCAACTGCAGTTGGTGTACCTGAGCCTGTTGCTTCAAAGGAACAACCTGCAGGAACCACTGTTGCAGTGACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGGATCCTGGTGCATCAGAAGCACAAGAAGTACAGTCGGAAAGAAAAGATTATGATGGCAGAACGAATGAAGGAAAACCTAGTGACTTTGGCAAATTTTGGTGGTACATGCGGAATGCAAATAATCTTCCTGAACCAATGGGGCATGTAGAGAAAACTTAG 1203 0.4123 MMDEAHGSSSSLPPFLAKTYEMVDDPSTDSIVSWSVTNKSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLHAQIPIGESERQSFTDEIEKLKHDKEQLLMELQKYQHEWQTCEIKIRCSNDRLEKLEQKQEVMVSSVSQVLQKSVIAVNILPLTETLDRKRRLPRSGYFNDEASIEDAIETSQTLPRVNAENTSVLTLNMERLDQLESSMVFWEAIAHDVGDSLVQIQSNMDFDESTSCADSPSISCAQLDVEVRPKSSGIDMNAEPTAVGVPEPVASKEQPAGTTVAVTGVNDVFWEQFLTEDPGASEAQEVQSERKDYDGRTNEGKPSDFGKFWWYMRNANNLPEPMGHVEKT* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2235 400 MobiDBLite consensus disorder prediction 349 377 - -
Apr3g2235 400 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g2235 400 Gene3D - 7 105 IPR036388 -
Apr3g2235 400 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g2235 400 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Apr3g2235 400 Coils Coil 126 153 - -
Apr3g2235 400 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 384 - -
Apr3g2235 400 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 384 IPR027725 -
Apr3g2235 400 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g2235 400 MobiDBLite consensus disorder prediction 355 373 - -
Apr3g2235 400 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g2235 400 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g2235 400 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2235 Apr-Chr3 38085824 38088561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2235 2 397 HSF AT4G18880 53.285 5.88e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr3g2235 HSF_DNA-bind 5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2235 K09419 - gmx:100798004 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2235 3 38085824 38088561 Apr3g2235 3 38085824 38088561 ECH
Apr1g1566 1 25199979 25202629 Apr3g2235 3 38085824 38088561 ECH
Apr3g2235 3 38085824 38088561 Apr1g1566 1 25199979 25202629 PCT