Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2234 ATGAAGTGGGGTGGCAGAAAACCTTCTTCATCTTCTTCTGCTTCCTCTTCTAGGCCTTCATTCATCTCTCATGCATCTCCTTTTTCATGGCTTTCCAAGTTCAAGCAGATGAAAATCAACTCAGAGCCAAAACCCGCATCACTGAAGCAGAATGCAAAACAGAATTCAATTCCATCTGATGCTTCACCCCATTATGCTTGTGGGAATAGAGAAAGGTTTTATGGAGGGGATGATGATGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTACTAATGAGCATAGGAAAAGTGAAGATATTCTGAAACCAGTAATGTACAGTTTGGATGCTGAGCATGCCATTCCATCCTCAAGTGATAGACTCAATGCTAAAAGACATGGTAGAAAAGAATGCAGTTTGAAGTTGAAGCAGAAGGAAACTGGACTAAGAGAAGAGACAAAATTGCTGAATGAAACAAAGAGTGTGAAGGAACTTGAATACTTAAGGAGGAGGTATGAGAGGAAAGCACAAAGGGTTTTGCAAGAGCAACTCTTGAAATTAGAACGAGCAGAAAAAGAAGCTGAATTTGCATCAAGTGAATGCTTAGAACAATTTGATTCACCAAGAACAATTTGCACACCAAGAAAGCATTTGTTTTCCTCTCATGTAGATTCAAGATGTTCTGGCCTTGCAAGTGTGAGAGAAGCTTGTGCATATAGTACCCATTTGGGTTCTGAGTGGTCGAATTTGAAACAAAGTGAAGAATTGAAAGCAAAGATTAACAAGCAGAGGCAATCACTTCATGTGAGCAGAGAAAACCAAAAGAGAAAACCAAAGCACAGTTCCAAGGTTAGAGTGTATTCTCCAAGGATGGGTTCCAAGGTTGAAATCCGCAAGATAAAGGCTATTGAGGAGAAAAAGAAGGCAAAACAGAAGATGAAAAAAGAAGAAGAAGAAAGAGAGGAAGTTGTGGAGGGAACAACAGGCTTGGATTTGGATAGCTTTGCTGTGGTGAAATGTTCTTTGGATCCTCAACAAGATTTTAGAGATTCAATGATTGAGATGATCACAGAGAAACAGATCAACCAGCCAGAAGAAATGGAAGAGCTTTTAGCATGTTATCTCACTTTAAATTCTAATGAGTACCATGATCTCATCATCAGAGTGTTCCGCCAGGGAAGATCAAATTATCTCCACACGAAATCAGAGAGTAAAATAGCAAATACGTCAATGGCATTTCATGAGCATCTTGTTCATTATATTGAAGAAGCAGCAGCAGCAGCTCATAGACTACATCACTTGACACAGCCACAACACTTGACACAGCCACAATATTACTGTAGCCGTAATGTCCACAACAGCATCAGAATCACCCAGCAATTGCAGGATGATTTCCATTCACAAAAACGGAGACTGGAGATAATCATACCAAGGTTGGATGTTGAGGTTATGGTCACTGTCATGGATGCAATTGTGTGA 1458 0.4019 MKWGGRKPSSSSSASSSRPSFISHASPFSWLSKFKQMKINSEPKPASLKQNAKQNSIPSDASPHYACGNRERFYGGDDDAFWRLSFGEEGTNEHRKSEDILKPVMYSLDAEHAIPSSSDRLNAKRHGRKECSLKLKQKETGLREETKLLNETKSVKELEYLRRRYERKAQRVLQEQLLKLERAEKEAEFASSECLEQFDSPRTICTPRKHLFSSHVDSRCSGLASVREACAYSTHLGSEWSNLKQSEELKAKINKQRQSLHVSRENQKRKPKHSSKVRVYSPRMGSKVEIRKIKAIEEKKKAKQKMKKEEEEREEVVEGTTGLDLDSFAVVKCSLDPQQDFRDSMIEMITEKQINQPEEMEELLACYLTLNSNEYHDLIIRVFRQGRSNYLHTKSESKIANTSMAFHEHLVHYIEEAAAAAHRLHHLTQPQHLTQPQYYCSRNVHNSIRITQQLQDDFHSQKRRLEIIIPRLDVEVMVTVMDAIV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2234 485 MobiDBLite consensus disorder prediction 1 24 - -
Apr3g2234 485 ProSiteProfiles OVATE domain profile. 330 389 IPR006458 -
Apr3g2234 485 Pfam Transcriptional repressor, ovate 334 385 IPR006458 -
Apr3g2234 485 MobiDBLite consensus disorder prediction 41 65 - -
Apr3g2234 485 Coils Coil 292 319 - -
Apr3g2234 485 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 329 385 IPR006458 -
Apr3g2234 485 Coils Coil 155 193 - -
Apr3g2234 485 MobiDBLite consensus disorder prediction 43 62 - -
Apr3g2234 485 MobiDBLite consensus disorder prediction 253 280 - -
Apr3g2234 485 PANTHER TRANSCRIPTION REPRESSOR OFP4 10 385 - -
Apr3g2234 485 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 10 385 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2234 Apr-Chr3 38077327 38086390 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Apr3g2234 Ovate 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2234 - - aprc:113859996 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2234 3 38077327 38086390 Apr3g2234 3 38077327 38086390 ECH
Apr3g2234 3 38077327 38086390 Apr1g1565 1 25193980 25195215 PCT