Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2232 ATGGCTTCGGGGGCTATATTCTCGTCGCTCCGGCGGCGGAGGTCGCCGTCGTTGGAGGCGTTTCTGGCGCCGGTGGACCTCGCCGACGTGGCGCTGGTGCGGACTCTGGTCTCTGTCGCCGGCGACCTCGTGTCTTGCTTCTCCGATCACCGGTTCCCCTTTCAGCGCCGGAATTCGCGTTCCCTCATCCGAAAAGTGGAGGTTTTCCGGTCATTGTTGGAGTGTTTGAGGGACTCCTCCGGCGGCGGCGTTGCTCTTCCCCCGGCGGCGGCGCTATGCCTGAAGGAGCTCTATCTGCTGCTCTATCGTTCCAAGATTCTCCTTGATTACTGTGGCCAATCGAGCAAGCTGTGGCTTTTGGTTCAGAACCATTCTATTTCTGGTCACTTTCATGATTTGAACCAAGAATTTTCGACCCTTTTGGACGTTTTCCCCGTTTGGGACGTTGACCTTAGTGATGATGTTAGGGAACATGTTGAATTGTTGCAGAGACAGTCTAGAAGGGCTAAGTTGTTCATAGACAAGAAAGATGATGCCCTTAGGATAAGGCTCTTCTGGTTTCTTGATGAGTTTGAGAGTGGGAGGGTTCCTGATTCTGCTGAATTCAGGTCTTTCTTTGTGGATAAGTTGCAGATTCTTGATGCCAAGAGTTGTAGGGTGGAAGTTGAAGCCTTGGAGGAGCAGATTGTGAATCATGTGGATGATGTTGAGCCAACAGTTCCTGTGCTTAATGGGATTGTGGCGATTACAAGGTGTTGTAGGTTTTTGTTATTTGGATTTGAGGAAGATGATGTTGAATTGGAAATAGGAAATCAGAAGGTCAAGAGGAGGTTGATTACACAGGAAATTGCTGAAACTTTTGTGACTGTTCCTAAGGACTTTTGCTGTCCGATATCGCTGGATTTGATGTGTGATCCTGTGACAATTTCGACGGGACAAACGTATGAAAGGAGGTTAATATCAAGGTGGATGGAGGATGGGCATTGTACTTGTCCAAAAACGGGGCAATTGCTTGTTCATAACCGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATCATGCAGTTTTGCACTGCACATGAGATACCCTATGATCCTCCAGAGGTGGTTGATGCAACTGCTGAAATGTTTGCATCAGCTTGTCCCTCCAAGGCTGCTCTTGAAGCTAACAGAAGGGCTGCCACACTTCTCATTCAGCAGCTTGCTAATGGGTCGCAAGCCGCAAAGACTGTAGCCGCTAGGGAGATAAGATTGCTGGCAAAAACTGGAAAGGAAAACCGTGCTTTCATTGCAGAAAGTGGGGCAATTCCTTATCTTCGGAACTTGCTTTCATCTCCTAACACTGTTGCACAGGAGAACTCTGTGACTGCCTTGCTCAACCTATCCATTTTTGAGAAAAACAAAAGCCGGATCATGGATGAGGAAGGTTGTTTGGGTTCAATAGTTGAGGTGTTGCAATTTGGGCACACAACCGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGTCTCTCTGCTGTCCATGACTATAAGAAAAGGATTGCAGATAATGTGGGAGCTGTTGAAGCACTGGCAGGGCTGTTGCAAGAGGGGACCCCAAGAGGAAAGAAGGATGCTGTAACGGCGTTGTTTAATCTCTCCACGCACACTGAGAATTGTTCGAGAATGATAGAGACTGGGGCAGTAGCAGCTATGGTTGGGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCCTGATTGTTCGGCAGCCTATTGGGGCCTTAGCAGTGGTGAGGGAGGAAGCAGCAGTAGCAGGATTGATGGGAATGATGCGTTGTGGAACACCAAGAGGTAAAGAGAATGCAGTTGCAGCATTGCTAGAGTTGTGCAGGAGTGGTGGTGCATCTGCAACTGAAAGGGTGGTCAGGGCACCAGCTTTGGCCGGATTACTTCAAACCCTGCTTTTTACAGGGACAAAGCGGGCAAGACGAAAGGCAGCTTCACTTGCTAGAGTGTTCCAGAGATGCGTGAATGCATCTCTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCCAGCAATTCAGCTTCAACTAGGGACACAAGCTTTGCTGGTGATGTTTCAGTTCAAATGTCCATTTCTGTTCCTGTTTTATAG 2154 0.4861 MASGAIFSSLRRRRSPSLEAFLAPVDLADVALVRTLVSVAGDLVSCFSDHRFPFQRRNSRSLIRKVEVFRSLLECLRDSSGGGVALPPAAALCLKELYLLLYRSKILLDYCGQSSKLWLLVQNHSISGHFHDLNQEFSTLLDVFPVWDVDLSDDVREHVELLQRQSRRAKLFIDKKDDALRIRLFWFLDEFESGRVPDSAEFRSFFVDKLQILDAKSCRVEVEALEEQIVNHVDDVEPTVPVLNGIVAITRCCRFLLFGFEEDDVELEIGNQKVKRRLITQEIAETFVTVPKDFCCPISLDLMCDPVTISTGQTYERRLISRWMEDGHCTCPKTGQLLVHNRLVPNRALRNLIMQFCTAHEIPYDPPEVVDATAEMFASACPSKAALEANRRAATLLIQQLANGSQAAKTVAAREIRLLAKTGKENRAFIAESGAIPYLRNLLSSPNTVAQENSVTALLNLSIFEKNKSRIMDEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCSRMIETGAVAAMVGALGNEGVAEEAAGALALIVRQPIGALAVVREEAAVAGLMGMMRCGTPRGKENAVAALLELCRSGGASATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCVNASLHYGGLGVGYAFASNSASTRDTSFAGDVSVQMSISVPVL* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2232 717 SUPERFAMILY ARM repeat 391 671 IPR016024 -
Apr3g2232 717 Gene3D - 393 669 IPR011989 -
Apr3g2232 717 CDD RING-Ubox_PUB 294 336 IPR045210 -
Apr3g2232 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Apr3g2232 717 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 698 - -
Apr3g2232 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Apr3g2232 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Apr3g2232 717 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Apr3g2232 717 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Apr3g2232 717 SMART arm_5 549 587 IPR000225 GO:0005515
Apr3g2232 717 SMART arm_5 508 548 IPR000225 GO:0005515
Apr3g2232 717 SMART arm_5 423 463 IPR000225 GO:0005515
Apr3g2232 717 SMART arm_5 588 629 IPR000225 GO:0005515
Apr3g2232 717 Pfam U-box domain 290 361 IPR003613 GO:0004842|GO:0016567
Apr3g2232 717 SUPERFAMILY RING/U-box 278 364 - -
Apr3g2232 717 Gene3D - 30 146 IPR036537 GO:0007166
Apr3g2232 717 PANTHER U BOX DOMAIN-CONTAINING 11 698 - -
Apr3g2232 717 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2232 Apr-Chr3 38066266 38069678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2232 1 717 U-box Gene Family AT1G29340 68.256 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2232 - - gmx:100797462 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2232 3 38066266 38069678 Apr3g2232 3 38066266 38069678 ECH
Apr3g2232 3 38066266 38069678 Apr1g1564 1 25175258 25178695 PCT