Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2213 ATGGATCAGGCAAGAAGCAAAGACAGTGGTGAGATTTTGGATCATGTTGATGAAAGGAAGGATGAGGATTTAAACCAGTTGAATGCAATTGATGCAGGAGCTGGACATAGCTTGGGTGAAAGAGTTAGTGTAAGTGGGGAAGGTGGGACTTCAGAAGTCATGTGTGATGATCTTGAATTGAATAAGGAGTTAAAGGAGGGGCCTCTAGAAGATAAGGGTCAGGACATGGGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGAACTAGTTATACTTCAAGAAATTTGGTTAGTGGTGAAGTGGTTGAGACCTGTGTTGTTATAGATTCTTCTCCTCAGATTGTGTATGTCAGTGGAGATAATAGGAAATTGGAAACAAAACCTAATGAATTGGGGTTGGGCAAGGTGTCTGTGAAAACACCAAAAGAGGTGTCTGAGACGGAGAAAAATTCATGCGTCATTGATGTAAACTGTGGTGACTGCAATGGGTTTAGTGAGAATTTGGAAGGTGAAATGATCTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGTAGCTGTTGGCACTGCTAATAATGCTACGACTAATACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCCCATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAGAGGAAACAGGTTGTGCGAAATATGTGGTGAGACTGCAAAAAATGTTTCAGATGTTACTGATAATGAATTTATTGAAGAGTGGAATGAAAGTAGATTTATGGACAGTGATAATACCTCATCGGGCAGGTTTGGCGGATGTTGGCGTGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTACCATGGTTCTTCCGTGTAAATATGTTCTAG 924 0.4134 MDQARSKDSGEILDHVDERKDEDLNQLNAIDAGAGHSLGERVSVSGEGGTSEVMCDDLELNKELKEGPLEDKGQDMGDPQEINDTLHGVDQGTSYTSRNLVSGEVVETCVVIDSSPQIVYVSGDNRKLETKPNELGLGKVSVKTPKEVSETEKNSCVIDVNCGDCNGFSENLEGEMICRICHLASGQPLEAVAVGTANNATTNTDLIQLGCACKDELGIAHSHCAEAWFKLRGNRLCEICGETAKNVSDVTDNEFIEEWNESRFMDSDNTSSGRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2213 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 307 - -
Apr3g2213 307 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g2213 307 Pfam RING-variant domain 199 240 IPR011016 GO:0008270
Apr3g2213 307 PANTHER ZINC FINGER, RING-CH-TYPE 1 307 - -
Apr3g2213 307 ProSiteProfiles Zinc finger RING-CH-type profile. 170 247 IPR011016 GO:0008270
Apr3g2213 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 252 IPR013083 -
Apr3g2213 307 MobiDBLite consensus disorder prediction 31 52 - -
Apr3g2213 307 SMART ringv_2 177 241 IPR011016 GO:0008270
Apr3g2213 307 SUPERFAMILY RING/U-box 175 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2213 Apr-Chr3 37917718 37920917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2213 173 306 C3H Transcription Factor Family AT5G05830 39.568 1.67e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2213 - - gmx:100791129 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2213 3 37917718 37920917 Apr3g2213 3 37917718 37920917 ECH
Apr3g2213 3 37917718 37920917 Apr1g1546 1 24964381 24968535 PCT