Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2209 ATGAAGCCCTTTTTCAGATTCTTGATTCTTCTAGGTCTGTATTCACTCGTGGAATCTTCATGCAACAGTGGAGAGAATGACTTGGTTTCAAAGGCTTTCAAGTCTGTCTCCGGCTTCAACCCTTCCTCCTGGTTCCAAAAACGAGGTTCCCACTGCTCACACTCTCATCTCACCAGAATAGTACTTCCCTCCCAAAACCTTAGCGGCACAATTTCATGGGGTTATCTGAGAAACATGTCCAAGTTGCAAGTTCTTGATCTCTCTGGGAATTCCCTACAAGGCCATGTGCCAAGTTGGTTCTGGTCAAGTTCAACCTTATTGGAAGTGAACCTCTCCAGGAACAGGTTCGGAGGAAGCATCATTATTGGGTCGAAGCCCACATCAGAAAACACCTCGTTTTCATCCATTCAAACGCTCAATCTCTCACACAACAGGTTCACCAATTCAGTTCAACTCGCTGGCTTCCAAAACCTTCAAATCCTCGACCTTTCTCACAACCAGCTAATAACACTCCCTTCCGGGTTCCCAAACCTCACCAAACTACAACACCTTGACCTCTCAAGCTGCAATCTCCAAGGCAACACAAAACCCATTTCCACTCTGCACTCCCTCCATTACTTGGACTTATCAAACAACACTTTAACCGGTTCTTTCCCTTCTGATTTCCCTCCACTCAGCACCCTCAAATTCCTCAACATCTCGTACAACAATTTCACCTCATCCATTAGCCTAAACAAGTTGAAGAAATTCAACAAATCATCTTTCATCCACGCTGGCAACAACTTCACATACGACAACAGTAGTGAAACTCGAAACTCAGCAACCCCACCCCAGAGAGAAAAACACCCGAAGCCAAAGTCCAAAACGGTAATTCCTGCAGCGTCCTCAGCACTTGTCCTAATCGTGTTGTCCGTTTGGGCACTTCGCGTTATTCACAAAAGGAGGAAGGAACGCGCCAAGAGGAACAAATGGGCAATCTCCATGCCGATCCCACATGGCACGAACGTGATGGTGGAGAAATCAGGGCCGTTCGCGTTTGAAACCGAATCAGGGTCAACGTGGGTCGCTGACCTCAAAGAACCGTCCTCGGCGCCAGTGGTGATGTTCGAGAAGCCATTGATGAATCTCAGCTTCAAGGACCTCATCGTTGCCACGTCACACTTTGGGAAGGACTCGCTTCTCGCGGAGGGAAGGTGTGGGCCCGTGTACCGGGCCGTTCTACCTGGTGATCTCCACGTGGCAATTAAGGTGGTGGAACACGCTAGAGACGTTGATCGTGATGACTGTGTGGGCATGTTCTTTGACCTCTCGAGGGTGAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCGGGTAAGGAAAAGCTGGTGCTATACGAGTTCATGGCAAACGGCGATTTAGGGAGGTGGCTACATGAGCTTCCAACTGGGGACACCAACGTAGAGGATTGGACTGGCGACACGTGGGAGATTCAAAACGGCGTCGTTGACGGATCCCCTGAAAAAATGGGGTGGCTGACACGACATCGTATCGCCGTGGGGATAGCGCGTGGCCTCGCGTACCTCCACCACGCGGGTTCCAAACCCGTGGTGCACGGCCACCTCGTCACGTCCATCATTTTACTCGCCGATGATTTCGAGCCCCGGATCGCCGATTTCGGGTTGCGAAACGACCCGAACCCGTGTGGCGGCACGGAGGCTGACGTGTACTGCTTCGGTGTGGTGGTGATGGAGCTGCTGACGCGGAAGGAAGGCACGGCGGAGACGGTGGTTGCGGTGAGGAAGGCGGTGAGGGAGGGGCAGGGTGTTAGGGTGCTCGACGAGAGGCTGCGACTCGGCGGTGACTCAGTAGTGAGTGAGATGGTAGAGACCCTCCGAGTCGCTATTCTGTGCACGGCCGATTCGCCCTCCAAGAGGCCCTCTATGCAGCAGGTTTTGGGTTTGCTCAAGGACATTCGTCCTCATCAACAACTCGTCCCGAGTTGA 1992 0.5211 MKPFFRFLILLGLYSLVESSCNSGENDLVSKAFKSVSGFNPSSWFQKRGSHCSHSHLTRIVLPSQNLSGTISWGYLRNMSKLQVLDLSGNSLQGHVPSWFWSSSTLLEVNLSRNRFGGSIIIGSKPTSENTSFSSIQTLNLSHNRFTNSVQLAGFQNLQILDLSHNQLITLPSGFPNLTKLQHLDLSSCNLQGNTKPISTLHSLHYLDLSNNTLTGSFPSDFPPLSTLKFLNISYNNFTSSISLNKLKKFNKSSFIHAGNNFTYDNSSETRNSATPPQREKHPKPKSKTVIPAASSALVLIVLSVWALRVIHKRRKERAKRNKWAISMPIPHGTNVMVEKSGPFAFETESGSTWVADLKEPSSAPVVMFEKPLMNLSFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVVEHARDVDRDDCVGMFFDLSRVKHPNLLPLSGYCIAGKEKLVLYEFMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVVDGSPEKMGWLTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSIILLADDFEPRIADFGLRNDPNPCGGTEADVYCFGVVVMELLTRKEGTAETVVAVRKAVREGQGVRVLDERLRLGGDSVVSEMVETLRVAILCTADSPSKRPSMQQVLGLLKDIRPHQQLVPS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2209 663 Gene3D Ribonuclease Inhibitor 25 126 IPR032675 -
Apr3g2209 663 Gene3D Transferase(Phosphotransferase) domain 1 566 661 - -
Apr3g2209 663 Gene3D Phosphorylase Kinase; domain 1 348 463 - -
Apr3g2209 663 PRINTS Leucine-rich repeat signature 158 171 - -
Apr3g2209 663 PRINTS Leucine-rich repeat signature 201 214 - -
Apr3g2209 663 Pfam Leucine rich repeat 55 116 IPR001611 GO:0005515
Apr3g2209 663 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Apr3g2209 663 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 659 - -
Apr3g2209 663 Gene3D Transferase(Phosphotransferase) domain 1 464 565 - -
Apr3g2209 663 SUPERFAMILY L domain-like 22 261 - -
Apr3g2209 663 Pfam Protein tyrosine and serine/threonine kinase 392 560 IPR001245 GO:0004672|GO:0006468
Apr3g2209 663 MobiDBLite consensus disorder prediction 266 289 - -
Apr3g2209 663 SMART LRR_typ_2 79 102 IPR003591 -
Apr3g2209 663 SMART LRR_typ_2 201 224 IPR003591 -
Apr3g2209 663 SMART LRR_typ_2 155 177 IPR003591 -
Apr3g2209 663 PANTHER KINASE, PUTATIVE-RELATED 3 659 - -
Apr3g2209 663 SUPERFAMILY Protein kinase-like (PK-like) 365 655 IPR011009 -
Apr3g2209 663 Gene3D Ribonuclease Inhibitor 127 272 IPR032675 -
Apr3g2209 663 ProSiteProfiles Protein kinase domain profile. 388 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2209 663 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2209 Apr-Chr3 37884313 37888142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2209 57 654 Receptor kinase-like Gene Family AT5G07280 31.201 4.59e-69 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Apr3g2209 PK_Tyr_Ser-Thr 5.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2209 - - gmx:100809704 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2209 3 37884313 37888142 Apr3g2209 3 37884313 37888142 ECH
Apr3g2209 3 37884313 37888142 Apr1g1540 1 24912661 24915573 PCT