Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2207 ATGTCAGATGGATATCAGAAGAGTGAGGAACAGGCTGATGACATTAATTCAAAGGGATCTTCCCAGAGATGCTCATCCTTTGACTTGAATGAAGAAGCTAGTAGTGAAGATAACAATGATAATGATGAAGCCTATGATGATAAAGCAAGGGATGAAGGTACTTCAACTAATAAAAGTAGCAGCACAACAAGAGAAGGAAACAATGAACGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCATCTATCGTTTGTGCATGCCGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTGAGGGGGCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTCGACGAGGCTGGGCAAGTATTAAGTCAAGCGTTCAAATCAACCCATGAACTTGGTCGTACTTCTCATGTAGCCCATCAGCCCTTGATTCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTGGCAAGTGATTACAACGACAACAGTTTTTTCCAGGGTCTCCTGCATCCCTCTTCCCTATCACATTCACCTTCAAAGGCCATCGATTCAAGGCAGCAGCAATTGTACTTCAATCATCAACCTTTTAGAAGACCAAATTACTTTAGCAACGAAGTTGTCTCAACAACCCTTCAAACGCAAGGAAGATCAATATCTTCAAACCAAATTCAACAAATGGATACTGCTGGCATTGCACCCATGAAACCAAGCCAATTTCTTGAGGAGAAAAGGTGGCCTCCTTTAGAAATTATGAACAATCATCAGTGGAAGAAAAGGTTACCTACCAATATTACTGCTAATACTGGGTCACAATCTGTTGTACATCAATTTGGGACCACTCCAGCATCTCTTAGATCAAGTGAGTTGAACTTTGGAAACAACACAAGAATCAGGGAACATCTATCAAACCCCTTTGAACATCGCAATCGTTCCAACAGTTTAAAGCTAGAATTTGATCCCCCATTCCGGATTAAGTTGAATCAAGAAAAATTGCAGAAAGACAAGCAATGGGTGCCTGATTTGCGGCTGAGTTTAAGTCAGAGAGATGACAACAATGATGGCAAGACTGATTATTGCAAAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCTTAG 1200 0.415 MSDGYQKSEEQADDINSKGSSQRCSSFDLNEEASSEDNNDNDEAYDDKARDEGTSTNKSSSTTREGNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQAFKSTHELGRTSHVAHQPLIPRQHFKMGNGGIILASDYNDNSFFQGLLHPSSLSHSPSKAIDSRQQQLYFNHQPFRRPNYFSNEVVSTTLQTQGRSISSNQIQQMDTAGIAPMKPSQFLEEKRWPPLEIMNNHQWKKRLPTNITANTGSQSVVHQFGTTPASLRSSELNFGNNTRIREHLSNPFEHRNRSNSLKLEFDPPFRIKLNQEKLQKDKQWVPDLRLSLSQRDDNNDGKTDYCKETQEINTKLSLS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2207 399 Gene3D - 82 139 - -
Apr3g2207 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 139 IPR017930 -
Apr3g2207 399 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 138 IPR006447 GO:0003677
Apr3g2207 399 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 399 - -
Apr3g2207 399 MobiDBLite consensus disorder prediction 1 16 - -
Apr3g2207 399 MobiDBLite consensus disorder prediction 17 32 - -
Apr3g2207 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 399 IPR044848 GO:0003700
Apr3g2207 399 SUPERFAMILY Homeodomain-like 81 137 IPR009057 -
Apr3g2207 399 Pfam Myb-like DNA-binding domain 85 135 IPR001005 -
Apr3g2207 399 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2207 Apr-Chr3 37867269 37873302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2207 18 152 G2-like Transcription Factor Family AT2G42660 51.471 1.61e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr3g2207 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2207 - - gmx:100787138 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2207 3 37867269 37873302 Apr1g1533 1 24807717 24812489 PCT