Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2197 ATGACTAGTTACTTGGCATTGGGTCTCCCTTTCTTGTCCTTATGCTTCTTAACCATAACCAGAACCATGCTTGCAGAAACTAGTTCCTTTGACCAATGCAAAGAAACAAGTTGTGGTATTGATGGACCATCCATCAGATTCCCCTTCAGACTTAAAGGAATACAACCCCAATGGTGTGCCCATAATCCCTGGTTTGATCTATACTGCACCCACACCAACCACACTGTGCTGGAACTCCCATCTGTTAAGGCCTTCGTCAAAAGCATCAACTACACTTCTCAACTCATAACCGTGTCTTATCCTGAAGCTTGCCTTCACAAACGGACTTCTCGCAGAAACACATATGACCATGGTTATGATATAATAACATCGGGAAACTTTTCTTGCCTCAATGTGCCTGGCTTTGAAGTTATAGCAGTACATTCCTCATCATCAATAATATGGTCTCCTTTATTATCTTGCACCAGAATCCAAAGCCCCTTATTATTGCCAAAGTCTTTGTTTAACAACAACGTTGATGCTGCTCTCAATTGGTTCCAACCAGACTGCAGAAGCTGCGAACAAAAAGGTGGCCAATGCAAGGCTAAAGAAAACACCTCTCAACCCAAATTCCAATGCATTGGCAAACGCAAAGGTTCATCAAAACGGAAACTGCTTGCTGGTATCCTAAGCCCTTTTCTGCTTATATTTGTTGGAGTCACAGCATATTTTTTATATATAGCTGGCATGGAAAGGAAGAACTATACAAGAATTAAAAAGTTTTTGGAGGATTACAAAGCAGTCAAGCCTGCCAGATACTCTTATGCAGATATAAAGAGGATAACAAATCAGTTCAAGGAAGAACTGGGGCAGGGGGCTTTTGGAACTGTCTTCAAAGGGAAGCTATCAAATGAAATTCAGGTTGCTGTTAAGGTCCTAAACACTTCAACGGGGAACGGTCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCAAATTCACCATGTCAATGTGGCACGCCTTGTTGGCTTTTGTGCAGACGGATTCAGAAGAGCCTTGGTGTATGAGTTTTTACCAAACGGTTCATTACAGAAATTCATATCATCAGCAGACAATAAGGATGTTTTTCTAGGTTGGGAAAAGCTACAGAATATTGCTCTTGGTGTAGCAAAGGGAATTGAGTATCTTCACCAAGGTTGTGATAAACGAATACTCCATTTTGACATCAAGCCTCATAACGTATTGCTAGACAACAGCTTCACACCCAAAATATCTGATTTTGGTTTGGCCAAGCTTTGTTCCAAGGATCAAAGTATTGTGTCAATGACCACAGCTAGGGGCACTTTGGGCTACATTGCACCAGAGGTATATTCTAGGAACTTTGGCAGTGTATCCTATAAATCAGACGTTTATAGTTATGGTATGTTGCTGCTAGAAATGGTTGGAGGAAGGAAAGTCACTGATGTCACAGAAGAAAATAGCAACCAAGTTTATTATCCACAATGGATTTATAATCTTCTTGAGAACAATGAAGAGATAACAATCCACATAGAAGGAGAAGACACTAAAGTTGCAAAGATGCTATCAATTGTGGGACTTTGGTGCATTCAGTGGCACCCAGTAAATCGTCCAACCATGAAAGCTGTGATTCAAATGCTGGAAGGAAATGGAGAGAATCTGGAGATGCCTCCTAATCCTTTTGCCTCTACATCTGCTAATAGAACAAATGCTAGATTTGGCACTGGACGTATGAACCAAGAGCTAGATGTTATCACGGAAATAGAGTGA 1767 0.4086 MTSYLALGLPFLSLCFLTITRTMLAETSSFDQCKETSCGIDGPSIRFPFRLKGIQPQWCAHNPWFDLYCTHTNHTVLELPSVKAFVKSINYTSQLITVSYPEACLHKRTSRRNTYDHGYDIITSGNFSCLNVPGFEVIAVHSSSSIIWSPLLSCTRIQSPLLLPKSLFNNNVDAALNWFQPDCRSCEQKGGQCKAKENTSQPKFQCIGKRKGSSKRKLLAGILSPFLLIFVGVTAYFLYIAGMERKNYTRIKKFLEDYKAVKPARYSYADIKRITNQFKEELGQGAFGTVFKGKLSNEIQVAVKVLNTSTGNGQEFINEMEAMCQIHHVNVARLVGFCADGFRRALVYEFLPNGSLQKFISSADNKDVFLGWEKLQNIALGVAKGIEYLHQGCDKRILHFDIKPHNVLLDNSFTPKISDFGLAKLCSKDQSIVSMTTARGTLGYIAPEVYSRNFGSVSYKSDVYSYGMLLLEMVGGRKVTDVTEENSNQVYYPQWIYNLLENNEEITIHIEGEDTKVAKMLSIVGLWCIQWHPVNRPTMKAVIQMLEGNGENLEMPPNPFASTSANRTNARFGTGRMNQELDVITEIE* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2197 588 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
Apr3g2197 588 SMART serkin_6 276 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2197 588 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 587 IPR045874 GO:0004672
Apr3g2197 588 SUPERFAMILY Protein kinase-like (PK-like) 260 547 IPR011009 -
Apr3g2197 588 Gene3D Transferase(Phosphotransferase) domain 1 351 555 - -
Apr3g2197 588 Gene3D Phosphorylase Kinase; domain 1 241 350 - -
Apr3g2197 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Apr3g2197 588 Pfam Wall-associated receptor kinase galacturonan-binding 33 99 IPR025287 GO:0030247
Apr3g2197 588 ProSiteProfiles Protein kinase domain profile. 276 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2197 588 PANTHER RECEPTOR-LIKE KINASE 24 587 - -
Apr3g2197 588 Pfam Protein kinase domain 278 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2197 Apr-Chr3 37757967 37761136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2197 182 559 Receptor kinase-like Gene Family AT1G66910 45.387 2.03e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr3g2197 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2197 - - mtr:MTR_4g073230 885.945