Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2196 ATGCCTAATGGATCTCTTGATAAACACACATTTTCACCCGAGCAAGCAAACTCATCATTAAGCTATGGGAAAATCTATGACATTTCTCTTGGAATTGCTCGCGGCATTAAGTATCTACACCAAGTTTGTGACATGCAAATCATACACTTTGATATAAAACCTCATAACATTCTTCTTGATGAGAATTTCAACCCCAAGATATCCGACTTTGGATTGGCGAAGTTGTACCGAATAGATGAAAGTACTTTGTCTCTAACAGCGGCAAGAGGAACAATGGGATACATGGCTCCTGAGTTGTTGTACAAAAACATTGGAAGCATCTCACACAAAGCTGATGTTTATAGTTTTGGAATGCTGTTGATGGAAATGGCAGGAAGAAGAAAGAATGTAAATTTTGTGGAGAATTCTTGGCAAAACTACTTTGCTAAATGGGTTTATGACCAATTTGAGGAAACAATAGATATAAGCAATGCAACGGATGAAGAAAAGAGTATGGCAAAGAAAATGATAGTGATAGCCTCAACATGCATACAAATGAAGCCTGATGATCGTCCCTCAATGAACGAAGTGATAGAGATGCTTGAAGGAGATGAAGTGCCCCAAGATGTTCTTCTTCCACCTGATCCTGAGCCTCCCCGAATTTGGCAAAGGATGTCAGCAGATGAAAATGGATTTGATGACAACAAACACTCATCATGA 699 0.3906 MPNGSLDKHTFSPEQANSSLSYGKIYDISLGIARGIKYLHQVCDMQIIHFDIKPHNILLDENFNPKISDFGLAKLYRIDESTLSLTAARGTMGYMAPELLYKNIGSISHKADVYSFGMLLMEMAGRRKNVNFVENSWQNYFAKWVYDQFEETIDISNATDEEKSMAKKMIVIASTCIQMKPDDRPSMNEVIEMLEGDEVPQDVLLPPDPEPPRIWQRMSADENGFDDNKHSS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2196 232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Apr3g2196 232 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 198 IPR045874 GO:0004672
Apr3g2196 232 PANTHER INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED 1 198 - -
Apr3g2196 232 SUPERFAMILY Protein kinase-like (PK-like) 1 196 IPR011009 -
Apr3g2196 232 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2196 232 Pfam Protein kinase domain 4 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2196 232 MobiDBLite consensus disorder prediction 198 232 - -
Apr3g2196 232 SMART serkin_6 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2196 232 Gene3D Transferase(Phosphotransferase) domain 1 1 203 - -
Apr3g2196 232 PIRSF ILK 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2196 Apr-Chr3 37752941 37756807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2196 1 209 Receptor kinase-like Gene Family AT5G38280 50.230 7.77e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr3g2196 Pkinase 3.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2196 - - mtr:MTR_4g073220 365.155