Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2188 ATGGAATATCAAAACGAAAAGGGCAAAGATGAGAGGTTCAGTGGGAAACTGAAGATGAAGAACAAGTCCAAGTTTGTTGGGGTGAGACAAAGAGCTTCTGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGATGTGGCTTGGTACTTATCAAACTGCTGAAGAAGCTGCTAGAGCTTATGATGAAGCTGCATGCCTCCTTAGAGGTTCAAACACTCGCACCAACTTCTCTACTCATCATGGCATTGCCACCAATTCTCCTATATCTATCAAACTAAGAAACATCCTTGATCGTAAAGCCATCTCAAGTCAACTTCAAATTCAAAACCAATCCTCTAATATAAGCCCCACTTTCCAACCAAATGGTGCTACTACCATTAATAATATCATGGACATGGTAGACAACCCTACATGTAGCAGTGAAGGTAAGTCTTTGTTTTGGGTTCATAACCAAGTCTCTGATAATCCGTATGGGATAGATATGAATAATATGATCAACTGCTCAATGGGAATTGTATCAAATACATCGCACTTTGATTATTCTTGGCCATTAGCTCCACAAAGGATTAACGAGCTACCAACACCAAAAGATGTTTTGAATGTAGAAAGCCAATTGTCAGACTCCCTATATGCCATGAATGAATGCCACGTAGAGGATACATATGAATATAAGTATGATTATGATGCCAATTATCCTCTCTCCCACTTTTCCTGCTTCACTTGA 735 0.3959 MEYQNEKGKDERFSGKLKMKNKSKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTHHGIATNSPISIKLRNILDRKAISSQLQIQNQSSNISPTFQPNGATTINNIMDMVDNPTCSSEGKSLFWVHNQVSDNPYGIDMNNMINCSMGIVSNTSHFDYSWPLAPQRINELPTPKDVLNVESQLSDSLYAMNECHVEDTYEYKYDYDANYPLSHFSCFT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2188 244 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Apr3g2188 244 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Apr3g2188 244 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Apr3g2188 244 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 228 - -
Apr3g2188 244 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Apr3g2188 244 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Apr3g2188 244 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Apr3g2188 244 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Apr3g2188 244 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Apr3g2188 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 11 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2188 Apr-Chr3 37697435 37698169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2188 1 100 AP2-EREBP Transcription Factor Family AT5G19790 65.000 3.28e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr3g2188 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2188 K09286 - gmx:100809046 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2188 3 37697435 37698169 Apr3g2188 3 37697435 37698169 ECH