Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2169 ATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCTGGTTCTTCTGCAAACAATGTGGGAACTGGTAGCACTTTAGCTCCTACACGACCTGTTTATGTTCCTCCCCATCTGAGGAACCGTCCACCATCAGCAGAATCCCCTGCTCCAACATATAGTGGGCCTTCTTCTGGTTCTGGCTCTAGTTCTGGTGCTGGATCACGTTGGCCTGCACCCAGAAATGATTATCGTTCTGGGTATGGTGGCGGTGGGCGTGGTGGAGGATGGGGAAACAGAAGTGTTGGATGGGATCGTGGCAGGGAGCGGGAAGTCAATCCATTTGGAGATGATGATAATGCTGAGCAGGCATTTAGTGACCAGGAGAATACAGGAATAAATTTTGATGCGTATGAAGATATTCCAGTGGAAACCAGTGGTGATAATGTGCCCCAACCTGTGAATACATTTGCAGAGATTGACTTGGGTGAGGGACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCCGTTCAGCGGCATGCCATACCAATTTCCCTAGCTGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTTCCAATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCGCCTCGTGGGGTGCGTACAGCGTATCCAGTTGCACTTGTTCTCTCACCGACTAGGGAGCTGTCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTACGGTGGAGCACCGATAAACCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGATATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATCAGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCTGCTGGTGTCAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATCTAATTATCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAACGGTGTACAAGGAAAGCAAGCATTGACTTTAGTATTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCTACAACTATTCATGGGGACAGGTCACAGCAGGAAAGAGAAATGGCTTTAAGGTCATTTAAAAGTGGAAACACCCCCATATTGGTTGCCACTGATGTTGCGGCCCGTGGTCTTGATATTCCCCATGTTGCACATGTGGTCAACTTTGACCTGCCAAATGATATTGACGATTATGTACACCGTATTGGAAGAACGGGGCGAGCAGGAAAGAAAGGTCTTGCTACTGCATTCTTTAATGATAACAATTCATCGCTAGCTAGGGCTTTAGCAGATCTGATGCTAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCCCGATCTTCTTTTGGTGGAGGAAGGAACCGTCGATCAGGAAGTGGTCGGTTTGGCAGCCGTGACTTTCGAAGGGAAGGCTCTTTTGGTAGAGGAGGTGCTTCAGATTACTACAGTGCAGGAAACAGCGGTGGTGGATATGGGGGCTCTGGTGGGTATGCTGGAGGTTATGGTCCTGGTGTCACCAGTGCATGGGACTGA 1842 0.4761 MRTSWADLAANSAAENAGPGSSANNVGTGSTLAPTRPVYVPPHLRNRPPSAESPAPTYSGPSSGSGSSSGAGSRWPAPRNDYRSGYGGGGRGGGWGNRSVGWDRGREREVNPFGDDDNAEQAFSDQENTGINFDAYEDIPVETSGDNVPQPVNTFAEIDLGEGLNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTAYPVALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMLEANQEVPAWLSRYAARSSFGGGRNRRSGSGRFGSRDFRREGSFGRGGASDYYSAGNSGGGYGGSGGYAGGYGPGVTSAWD* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2169 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
Apr3g2169 613 MobiDBLite consensus disorder prediction 101 115 - -
Apr3g2169 613 Gene3D - 109 371 IPR027417 -
Apr3g2169 613 MobiDBLite consensus disorder prediction 1 121 - -
Apr3g2169 613 Gene3D - 372 551 IPR027417 -
Apr3g2169 613 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Apr3g2169 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 525 IPR027417 -
Apr3g2169 613 SMART ultradead3 172 384 IPR014001 -
Apr3g2169 613 MobiDBLite consensus disorder prediction 551 571 - -
Apr3g2169 613 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
Apr3g2169 613 SMART helicmild6 427 508 IPR001650 -
Apr3g2169 613 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 50 581 - -
Apr3g2169 613 MobiDBLite consensus disorder prediction 52 74 - -
Apr3g2169 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Apr3g2169 613 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g2169 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 547 IPR001650 -
Apr3g2169 613 CDD SF2_C_DEAD 381 517 - -
Apr3g2169 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 581 - -
Apr3g2169 613 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2169 Apr-Chr3 37558703 37565668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2169 150 540 Eukaryotic Initiation Factors Gene Family AT3G19760 32.143 6.65e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2169 K11594 - gmx:100795756 988.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2169 3 37558703 37565668 Apr3g2169 3 37558703 37565668 ECH