Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr3g2162 | ATGGGATGGGTAGAGAGGAATTGCATCGAAGTAAAAATGGCTGGCGTGTCTCTCAAGTGCGGCGACTGTGGGGCTCTGTTGAGGTCCGTAGAAGAAGCGCAGGAACACGCCGAACTCACTTCCCATTCGAACTTCTCCGAATCGACCGAACCTGTTCTCAATCTCGTTTGCTCCATTTGCTCTAAACCCTGCCGATCCAAAACCGAGTCTGATTTGCACACAAAGAGGACCGGCCATGCCGATTTTGTTGACAAGACTTCCGAGGCTGCTAAACCGATAAGTTTGGAGGCACCAAAGGTAGATGCAACTCAAACGTCACAAAACCCCATCGCTGAGCAAAATGAAGAAATGGTTGTTCCCGAAGTGGACAAAAAGCTATTCGAGGAGCTTGAATCCATGGGTTTTTCAGCCGCTCGAGCAACGCGGGCACTTCATTACTCTGGTAATGCTGGCCTTGAGGCTGCTGTAAGTTGGATAGTAGAGCATGAGAATGACCCTGATGTAGATCAGATGCCCTTGGTACCCGCCAATTCTATAACTGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTAAAGGTCAAACAGCAGGAACTAAGGGAGAGAGCTCGTAAGAAGAAAGAAGAGGAAGAGAAAAGAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGTATTGGCAAGGAGTTGTTGGAAGCAAAGAGAATTGAAGAAGAGAATGAGAGAAAACGCTTGTTGGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTACCTCCAGAGGAACCTTCAGCCGCCAAACCTTCACCTGTTGTGGAGGAGAAAAAGGGTTTTCTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGTTCTCTCAAACAGAACCACAAGGAGGATGATGCCAAAGTAAAGAGAGCATTCCAAACACTTCTAACTTATGTTGGGAATGTTGCCAGAAATCCTGACGAGGAAAAATTCAGGAAGATTCGACTTAGTAATCAATCTTTTCAGGAAAGAGTTGGTTCTTTGAAAGGGGGCATTGAATTTCTGGAAATTTGCGGGTTTGAGAAGATCGATGGTGGTGAGTTTTTGTTTTGTCCTAGGGATAAAGTTGAGATGGCTGTCCTGAATTCTGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG | 1266 | 0.4558 | MGWVERNCIEVKMAGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEPVLNLVCSICSKPCRSKTESDLHTKRTGHADFVDKTSEAAKPISLEAPKVDATQTSQNPIAEQNEEMVVPEVDKKLFEELESMGFSAARATRALHYSGNAGLEAAVSWIVEHENDPDVDQMPLVPANSITEAPKPSLTPEELKVKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEEKRAREKIKQKLEEDKAERRRRLGLPPEEPSAAKPSPVVEEKKGFLPVRPATKAEQMRECLRSLKQNHKEDDAKVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQERVGSLKGGIEFLEICGFEKIDGGEFLFCPRDKVEMAVLNSAGSELDSAIKNPFFGVL* | 422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr3g2162 | 421 | CDD | UBA_PUB_plant | 121 | 169 | - | - | |
| Apr3g2162 | 421 | MobiDBLite | consensus disorder prediction | 250 | 303 | - | - | |
| Apr3g2162 | 421 | PANTHER | F13M7.16 PROTEIN | 13 | 421 | - | - | |
| Apr3g2162 | 421 | MobiDBLite | consensus disorder prediction | 250 | 281 | - | - | |
| Apr3g2162 | 421 | Coils | Coil | 227 | 272 | - | - | |
| Apr3g2162 | 421 | Pfam | UBA/TS-N domain | 128 | 159 | IPR015940 | - | |
| Apr3g2162 | 421 | Gene3D | - | 123 | 168 | - | - | |
| Apr3g2162 | 421 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 20 | 42 | IPR013087 | - | |
| Apr3g2162 | 421 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 121 | 162 | IPR015940 | - | |
| Apr3g2162 | 421 | Pfam | PUB domain | 328 | 398 | IPR018997 | - | |
| Apr3g2162 | 421 | SMART | uba_6 | 123 | 161 | IPR015940 | - | |
| Apr3g2162 | 421 | PANTHER | F13M7.16 PROTEIN | 13 | 421 | - | - | |
| Apr3g2162 | 421 | SUPERFAMILY | PUG domain-like | 303 | 417 | IPR036339 | - | |
| Apr3g2162 | 421 | Gene3D | - | 312 | 411 | - | - | |
| Apr3g2162 | 421 | SMART | PGNneu | 331 | 394 | - | - | |
| Apr3g2162 | 421 | CDD | PUB_UBA_plant | 315 | 421 | - | - | |
| Apr3g2162 | 421 | Coils | Coil | 192 | 224 | - | - | |
| Apr3g2162 | 421 | MobiDBLite | consensus disorder prediction | 195 | 220 | - | - | |
| Apr3g2162 | 421 | SUPERFAMILY | UBA-like | 108 | 175 | IPR009060 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr3g2162 | Apr-Chr3 | 37514066 | 37520311 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr3g2162 | 111 | 421 | C2H2 Transcription Factor Family | AT1G04850 | 81.210 | 2.15e-152 | 432 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr3g2162 | K24348 | - | gmx:100779218 | 646.351 |