Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2154 ATGCGGTGTTATGGCTTAATGATCCCTGGAAGCGACCGTGGGTTGTGCGTCCCAAGCGGAAGGGCGGTGTTTGTGAGGCCCAGCAGGCCCATGAGCGCAATCGTGGTGGGGTTGGGCTTTCCGAAGGCGAAGGCGAGCCTAAGAGATGGGTTGGTGGTGGAGGAAGAGACGAGCTTCTACGAGCTTTTAGGGATACCGGAATCTGGTTCGTTGACGGAGATCAAGCAAGCCTACAAGCAACTCGCCCGGAAGTACCACCCGGATGTGTCTCCTCCGGGTCGGGTCGAGGAGTACACTAAGAGATTTATTCAGGTGCAGGAGGCCTACGAAACCTTGTCTGATCCCACTCTCAGAGCCATCTATGATAGAGACATGGCCAGGGGCATTCGCCTTGCCTTCAACGCTCGTAGACACCACCATCTGGTCGTTGAACAAAAAAGCGAATGGAAAACTCGCTGGCAATCTCAACTGTCAGAACTGAAGAGAAGAAGTAAAAGCAAGGATGCTGCTGGAGCGAATATGTCATGGGCCGCTCGAATGCGCCAGCATAGAGATGACTTGTCAGATTAA 570 0.5351 MRCYGLMIPGSDRGLCVPSGRAVFVRPSRPMSAIVVGLGFPKAKASLRDGLVVEEETSFYELLGIPESGSLTEIKQAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPTLRAIYDRDMARGIRLAFNARRHHHLVVEQKSEWKTRWQSQLSELKRRSKSKDAAGANMSWAARMRQHRDDLSD* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2154 189 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 26 187 - -
Apr3g2154 189 Pfam DnaJ domain 59 122 IPR001623 -
Apr3g2154 189 ProSitePatterns Nt-dnaJ domain signature. 102 121 IPR018253 -
Apr3g2154 189 PRINTS DnaJ domain signature 60 78 IPR001623 -
Apr3g2154 189 PRINTS DnaJ domain signature 78 93 IPR001623 -
Apr3g2154 189 PRINTS DnaJ domain signature 97 117 IPR001623 -
Apr3g2154 189 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 26 187 - -
Apr3g2154 189 ProSiteProfiles dnaJ domain profile. 58 125 IPR001623 -
Apr3g2154 189 SUPERFAMILY Chaperone J-domain 53 129 IPR036869 -
Apr3g2154 189 Gene3D DnaJ domain 46 148 IPR036869 -
Apr3g2154 189 CDD DnaJ 59 114 IPR001623 -
Apr3g2154 189 MobiDBLite consensus disorder prediction 160 189 - -
Apr3g2154 189 SMART dnaj_3 57 117 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2154 Apr-Chr3 37437682 37441478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2154 55 122 C2H2 Transcription Factor Family AT1G74250 43.662 2.51e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2154 - - gmx:100101903 259.225