Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2135 ATGGCTGAAACTCAATCTCCCACACCCATCATAAGCATAAGCACAACACATGATGATCACCCTTCACAAGTTGGTGGGTTCGATTGGATGGTTCTTGTGGCAGCCATATTATGTGCCTTTGTTTGTGCTCTTGGCCTTAACACTATGTTACAATGTGTGTTTCAATGTGCTGGTCGTGTCCTCACACAACCTTGTCAATGGATTGCTTCTCGTAGGCTCAATTCAGGGCTCAAAAGGAATGAAATGGTTGCTTTGCCAACCTCAACTTACACCAACTCTACTTCTTCATCTTCACCTTCTAATAATAATTGTGTCATTTGCTTGGCTGAGTTCTCTGACGGGGACCAAATAAGGTTCCTCCCCAAGTGCAACCACTATTTCCATGTTGTTTGTATAGACAAATGGCTTCTATCTCATTCCTCTTGTCCTACTTGCAGACACCTACTTAAGTCTAATGATTCTGTTCACTCCTTGCATATTGTCATAGCTTAG 492 0.4248 MAETQSPTPIISISTTHDDHPSQVGGFDWMVLVAAILCAFVCALGLNTMLQCVFQCAGRVLTQPCQWIASRRLNSGLKRNEMVALPTSTYTNSTSSSSPSNNNCVICLAEFSDGDQIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLKSNDSVHSLHIVIA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2135 163 Pfam Ring finger domain 102 146 IPR001841 -
Apr3g2135 163 SUPERFAMILY RING/U-box 99 152 - -
Apr3g2135 163 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 159 - -
Apr3g2135 163 SMART ring_2 104 145 IPR001841 -
Apr3g2135 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Apr3g2135 163 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Apr3g2135 163 PANTHER OS06G0666500 PROTEIN 14 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2135 Apr-Chr3 37277271 37277762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2135 1 149 C3H Transcription Factor Family AT1G20823 39.873 2.68e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2135 - K19040 gmx:100779286 254.603