Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2111 ATGGCCGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTTTATTATGATGCCAAGTTTGGTAGGAAGAAAGTCGCGGAGGATGGCGAAAATGGTGATAAACCGGTCAGTAATGGAAGTTCATTGGGCATTGCATCTAATGGCAAAAGAGCGTCGGATATGGCTATTTACGAGCAGTTTCAAAGCCAGGAGCAGAATCTGACTCACACTAATGGTATTTCTCCGAACAATATGGATGAAAGGCCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGACATGCGTTCTTTAGCAGAGAGCCTAAGTAGGGATATCGTTCGTGGAAGTCCGGATGTTAAGTGGGAAAGCATCAAAGGATTGGAGAATGCCAAACGTTTATTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTATTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTCCTCTTTGGCCCTCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTAGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCTAGGCATCATGCTCCCTCGACAATATTTCTTGATGAAATTGATGCAATCATTACTCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTAAAAACTGAGCTTCTCATTCAGATGGATGGTTTGACACGGACAGATGAACTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTGGAGAAGCGTATACTTGTACCACTTCCAGAACCAGAAGCGAGAAGAGCAATGTTTGAGGCACTCCTTCCCCCACAGCCTGACGAGGAACCGATCCCCTACGATTTACTGGTGGACCAGACTGAAGGATATTCAGGCTCAGATATCCGATTACTCTGTAAAGAGACAGCAATGCAGCCCTTGAGACGCTTAATGTCGCAACTTGAAAAGAGACAGGAGGTGGTCCCTGATGAAGAGTTACCGGGAGTTGGGCCAATCAGACCTGAAGACATAGAGACAGCTTTAAAGAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAATTCAATGCTGATTACGGTAGTCAAATACTACAATGA 1200 0.4483 MAEEPMPTRWSFQDFKFYYDAKFGRKKVAEDGENGDKPVSNGSSLGIASNGKRASDMAIYEQFQSQEQNLTHTNGISPNNMDERPQKSLLPPFESADMRSLAESLSRDIVRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIITQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEALLPPQPDEEPIPYDLLVDQTEGYSGSDIRLLCKETAMQPLRRLMSQLEKRQEVVPDEELPGVGPIRPEDIETALKNTRPSAHLHAHKYDKFNADYGSQILQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2111 399 Gene3D - 114 389 IPR027417 -
Apr3g2111 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 381 IPR027417 -
Apr3g2111 399 SMART AAA_5 151 288 IPR003593 -
Apr3g2111 399 MobiDBLite consensus disorder prediction 29 48 - -
Apr3g2111 399 Pfam AAA+ lid domain 313 347 IPR041569 -
Apr3g2111 399 Gene3D - 287 375 - -
Apr3g2111 399 CDD AAA 122 286 - -
Apr3g2111 399 Pfam ATPase family associated with various cellular activities (AAA) 155 285 IPR003959 GO:0005524|GO:0016887
Apr3g2111 399 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 397 - -
Apr3g2111 399 PANTHER AAA DOMAIN-CONTAINING 9 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2111 Apr-Chr3 37046923 37054585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2111 149 358 Calmodulin-binding Proteins AT3G56690 36.150 1.93e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2111 K07767 - gmx:100794098 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2111 3 37046923 37054585 Apr3g2111 3 37046923 37054585 ECH