Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2099 ATGGCGAAAAGAGCACAAAGGCCTCACTCTGCTTCTTCGGACTCTACTTCTGCCTCTTCCGGCAAACTAGTGTTGAGGATTAAGTCAAACGAGGGAATCAAGAGATCAGTTCAGCAGACTAATTCAAGAAAGAAACCGAAAACAAAGCAAAAGAAGAACAAACAAAAGATTGATGCTAAGAGACCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAACGTGCAGAATTTGATAGAGCTATGGCCAAATACAACAAGAAAATGGAAAGCGGTGAATTTGAAGACACTGATGAGGAATCAGAGTTTGATGAGTGA 453 0.3996 MAKRAQRPHSASSDSTSASSGKLVLRIKSNEGIKRSVQQTNSRKKPKTKQKKNKQKIDAKRPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMAKYNKKMESGEFEDTDEESEFDE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2099 150 CDD HMGB-UBF_HMG-box 62 128 - -
Apr3g2099 150 MobiDBLite consensus disorder prediction 8 24 - -
Apr3g2099 150 SUPERFAMILY HMG-box 48 139 IPR036910 -
Apr3g2099 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 149 - -
Apr3g2099 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Apr3g2099 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 3 149 - -
Apr3g2099 150 MobiDBLite consensus disorder prediction 1 65 - -
Apr3g2099 150 SMART hmgende2 61 132 IPR009071 -
Apr3g2099 150 MobiDBLite consensus disorder prediction 40 59 - -
Apr3g2099 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Apr3g2099 150 Gene3D High mobility group box domain 55 146 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2099 Apr-Chr3 36919558 36923569 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr3g2099 HMG_box 1.9e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2099 - - gmx:100305607 216.853