Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2096 ATGTTATTTCTAAAGATTAGTTTGACTATAGTCATAGTCTTCTCCCTTGCATCCTTAGCTTCATATGCTGAAACAAAGGTGGATGTTGAAATTGAAGCTTTGAAAGCTTTCAAAAACTCCATCACCCATGACCCAAATGGGGCTCTTGCAGATTGGGTTGACAGACACCCTCATTGCAACTGGTCTGGCATTGCATGTGACTCATCTTTAAATCACGTCACTTCAATTTCTCTGGTTAGTCTTCAGCTCCAAGGGGTGATTTCACCATTCCTTGGAAACATTTCAGGCCTTCAGATTCTTGATTTAACTTCAAATTCATTCACTGGTCACATTCCTCCTCAGCTAAGTTTTTGCACTCAACTTTCTCAACTAATTTTTTTTGACAATTCTCTCTCAGGCACAATCCCACCTGAACTAGGAAACCTCAAAAAACTGCAGTACTTGGATTTAGGTAATAACGGCTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTCCAACAACCTCACTGGCATAATCCCATCAAACATAGGGAATCTAGTTAATGTTACACAGATTGTAGGATTTGGAAATAACTTGGTGGGGTCTATACCTCTTTCCATAGGTCAGTTGGGAGCTTTGCAATCTATTGATTTTAGCCAAAACAAGTTATCAGGTGTAATACCTCAAGAGATTGGAAATCTCACAAATTTAGTATACCTTCTATTGTTTCAAAATTCCATGACTGGGAAAATCCCTTCTGAGATTGCCAAGTGTAGCCAACTTTTGCACCTTGATTTATATAAAAATGAGTTTATTGGTAGTATTCCTCCAGAGCTAGGAAGTTTAGTTCAGTTAGAGACATTGAGGTTATATCACAATAACTTGAATTCCACGATTCCATCTTCCATATTCCAGTTGAAATCACTAACACATTTAGAACTCTCAGAGAATAACTTAGAGGGAACAATATCTTCTGAGATTGGATATCTGAGTTCCTTACAATATCTAACCCTGCATGTAAATAAGTTTACTGGGAAGATCCCTTCATCAATAACAAAGCTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTCCTTTCAGGTGAACTTCCTTCAAACTTGGGTGTGTTTCAAAATTTGAAGTTTCTTGTTTTGAGCTCCAACTTTTTTCATGGATCCATTCCCCCTAGCATTGCCAATTGTACTAGTCTGGTAAATGTGAGTTTATCTTTAAATGCTTTAACTGGGAAAATTCCTGAGGGATTTTCAAGGATGCCCAATCTTACTTTCCTGTCTCTTGCATCCAATAAAATGACGGGGGAAATCCCAGATGACCTCTACAACTGCTCAAATCTTAGAAGTCTAAGTTTGGCAGAGAACAACTTCAGTGGATTGATAAAATCTGGTATCAAGAACCTGTCCAAACTCCTACGTTTGCTGCTGAATGTGAATTCTTTCATGGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCATCACTTTATCACTTTCTGAGAATAAGTTTTCAGGTCAAATTCCACCTGAACTATCCAAACTTTCTCTCCTTCAAGGGCTATCTCTCCATGAAAATGAATTAGAAGGAACCATACCTGATAAACTCTCGGAATTACAACAACTAACCAAACTTTTGCTGCATCAAAACAAGTTGGTTGGTCAAATACCCGATTCTATCTCAAAGCTTGAGATGCTTTCATACTTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGGAGCATGGGGAAGCTTAATCAGCTTTTAGTCTTGGATCTCTCTCACAACCAATTCATAGGATCAATTCCTGGAGATGTCATTGCAGACTTCAAAGATATGCAGATGTATCTTAACCTTTCTTACAACCACTTTGATGGAGATGTTCCAACTGAGTTGGGCATGTTGGAAATAGTACAAGCCATTGATATTTCAAACAATAATCTTTCAGGTTTCATTCCCAAAACACTTACTGAGTGCAGAAATTTGTTCAATCTTGATTTTTCAGCAAACAATATTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGAGCTTGATTGAAAGCTTAAACCTCTCAAGAAATCATTTAGAAGGTGAAATCCCTGCAATATTGGCAGAGCTTGATCATCTTAGTTCCCTTGATCTTTCTCAGAATGACTTGAAGGGAACTATTCCTGAGGGCTTTGCCAATCTTTCCAATCTGGTACATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCTGTACCTAAGACAGGATTATTTGCACACATTAATGCATCTAGTATGATGGGAAACCAGGATCTTTGTGGGGCAAAATTCCTACAGCCATGCAGAGAGACAAAACATTCACTATCCAAGAAGAGCATATCTATTATTGCTGCACTTGGATCTTTCGCTATACTTCTATTTCTGGTGTTAGTGATTCTAATTCTCAATCGAGGTACCAAACTCTGCAAATCTAAAGAATGTGACATTGGTGTGAATCATGAACCAGACTACAGTTCAGCATTAGCTCTTAAAAGGTTCAATCCAAAAGACTTGGAAAATGCCACAGGTTTTTTCAGTTCAGACAACATCATTGGCGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAATTTGAAGATGGCCAAATTGTAGCCATAAAAAAATTGAATTTGAACCAATTCTCTGCAAATACTGACAAGATCTTCAAGCGAGAAGCCAACACCTTAAGCCAGCTGAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGGAAAGTGGGAAAATGAAGGCTTTAGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGGCAAAGCGATAGATCAGCGTGTGACCTCTGAGTGGACATTATCTGAAAGACTCCGAGTTTTCATTTCTATTGCTAGTGGATTGGATTACTTGCACTCTGGTTATGATTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATTCTTTTGGACAGAGAGTGGGAAGCTCATGTGAGTGATTTTGGGACTGCTCGAATACTTGGTCTTCATCTGCAGGATGGTAGTACCCTCAGCTCGTCAGCAGCTTTGCAAGGCACAATTGGTTATATGGCACCAGAATTTGCCTACATGAGGAAAGTAACGACTAAAGCGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCAACAGGGCTATCAGAAGAGGATGGCTTGCCAATCAGTTTGCATGAAGTAGTGGCAAAAGCCCTTGCCAATGGAATGGAACAGCTTGTCACTATTGTGGACCCTATGTTGACCAGGAATGTTACAAAAGACCATGTTGAAGTATTGGCAGAGCTCTTTAAGCTATCCTTGTGTTGCACCCTCCCTGATCCTGAACATCGACCCAATATGAATGAAGTGTTATCTGCCCTTGTGAAGCTTCAAACAACAAGATAG 3492 0.3935 MLFLKISLTIVIVFSLASLASYAETKVDVEIEALKAFKNSITHDPNGALADWVDRHPHCNWSGIACDSSLNHVTSISLVSLQLQGVISPFLGNISGLQILDLTSNSFTGHIPPQLSFCTQLSQLIFFDNSLSGTIPPELGNLKKLQYLDLGNNGLNGSLPDSIFNCTSLLGIAFNSNNLTGIIPSNIGNLVNVTQIVGFGNNLVGSIPLSIGQLGALQSIDFSQNKLSGVIPQEIGNLTNLVYLLLFQNSMTGKIPSEIAKCSQLLHLDLYKNEFIGSIPPELGSLVQLETLRLYHNNLNSTIPSSIFQLKSLTHLELSENNLEGTISSEIGYLSSLQYLTLHVNKFTGKIPSSITKLTNLTYLSMSQNLLSGELPSNLGVFQNLKFLVLSSNFFHGSIPPSIANCTSLVNVSLSLNALTGKIPEGFSRMPNLTFLSLASNKMTGEIPDDLYNCSNLRSLSLAENNFSGLIKSGIKNLSKLLRLLLNVNSFMGPIPPEIGNLNQLITLSLSENKFSGQIPPELSKLSLLQGLSLHENELEGTIPDKLSELQQLTKLLLHQNKLVGQIPDSISKLEMLSYLDLHGNKLNGSIPRSMGKLNQLLVLDLSHNQFIGSIPGDVIADFKDMQMYLNLSYNHFDGDVPTELGMLEIVQAIDISNNNLSGFIPKTLTECRNLFNLDFSANNISGPIPAEAFSHMSLIESLNLSRNHLEGEIPAILAELDHLSSLDLSQNDLKGTIPEGFANLSNLVHLNLSFNQLEGPVPKTGLFAHINASSMMGNQDLCGAKFLQPCRETKHSLSKKSISIIAALGSFAILLFLVLVILILNRGTKLCKSKECDIGVNHEPDYSSALALKRFNPKDLENATGFFSSDNIIGASSLSTVYKGQFEDGQIVAIKKLNLNQFSANTDKIFKREANTLSQLRHRNLVKVLGYAWESGKMKALVLEYMENGNLDSIIHGKAIDQRVTSEWTLSERLRVFISIASGLDYLHSGYDFPIVHCDLKPSNILLDREWEAHVSDFGTARILGLHLQDGSTLSSSAALQGTIGYMAPEFAYMRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEDGLPISLHEVVAKALANGMEQLVTIVDPMLTRNVTKDHVEVLAELFKLSLCCTLPDPEHRPNMNEVLSALVKLQTTR* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2096 1163 SUPERFAMILY RNI-like 303 614 - -
Apr3g2096 1163 Gene3D Phosphorylase Kinase; domain 1 837 946 - -
Apr3g2096 1163 SMART LRR_typ_2 142 166 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 745 770 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 721 744 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 286 310 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 214 238 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 430 454 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 550 574 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 94 118 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 358 384 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 502 526 IPR003591 -
Apr3g2096 1163 SMART LRR_typ_2 598 622 IPR003591 -
Apr3g2096 1163 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Apr3g2096 1163 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Apr3g2096 1163 ProSiteProfiles Protein kinase domain profile. 868 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2096 1163 SUPERFAMILY RNI-like 68 395 - -
Apr3g2096 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 109 162 - -
Apr3g2096 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 363 1159 - -
Apr3g2096 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 117 - -
Apr3g2096 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 163 297 - -
Apr3g2096 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 289 369 - -
Apr3g2096 1163 Gene3D Transferase(Phosphotransferase) domain 1 947 1163 - -
Apr3g2096 1163 Gene3D Ribonuclease Inhibitor 376 518 IPR032675 -
Apr3g2096 1163 SUPERFAMILY Protein kinase-like (PK-like) 846 1156 IPR011009 -
Apr3g2096 1163 SUPERFAMILY L domain-like 543 785 - -
Apr3g2096 1163 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Apr3g2096 1163 Pfam Leucine rich repeat 652 710 IPR001611 GO:0005515
Apr3g2096 1163 Pfam Leucine rich repeat 384 442 IPR001611 GO:0005515
Apr3g2096 1163 Pfam Leucine rich repeat 720 758 IPR001611 GO:0005515
Apr3g2096 1163 SMART LRR_sd22_2 310 336 - -
Apr3g2096 1163 SMART LRR_sd22_2 214 240 - -
Apr3g2096 1163 SMART LRR_sd22_2 721 747 - -
Apr3g2096 1163 SMART LRR_sd22_2 142 174 - -
Apr3g2096 1163 SMART LRR_sd22_2 358 381 - -
Apr3g2096 1163 CDD STKc_IRAK 874 1159 - -
Apr3g2096 1163 Pfam Protein kinase domain 870 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2096 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 363 1159 - -
Apr3g2096 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 109 162 - -
Apr3g2096 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 117 - -
Apr3g2096 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 163 297 - -
Apr3g2096 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 289 369 - -
Apr3g2096 1163 Gene3D Ribonuclease Inhibitor 191 263 IPR032675 -
Apr3g2096 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Apr3g2096 1163 Gene3D Ribonuclease Inhibitor 519 627 IPR032675 -
Apr3g2096 1163 Gene3D Ribonuclease Inhibitor 268 375 IPR032675 -
Apr3g2096 1163 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Apr3g2096 1163 Gene3D Ribonuclease Inhibitor 628 799 IPR032675 -
Apr3g2096 1163 SMART serkin_6 868 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2096 Apr-Chr3 36884490 36889597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2096 2 1160 Receptor kinase-like Gene Family AT5G46330 53.767 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Apr3g2096 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2096 K13420 - gmx:100817960 1902.49