Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2088 ATGGAGGAGCCTCTGCTTCCATATTTCAGCCCCAGAAAGAAGCCTTCACCATTGGCACCGCAGCTTTGTCCTTTGCCAGAACATGATGAGATGGTTCTTCCTTTGACCCCTTCGCAGTTCAAGGATCGCCTCATATTTGGCCCTTCTTGTGCCTCACCAAGGGACCCTTCACCTTTGGCTGAGGCATTAACACTTTCTTATAATTCCCCCAAATGTGCTTCTTCTTCCTCCACCACACAGGACTTAGCATCGGCACTCTTTGATTCGCAACAGTCCCAACAACAACAACAACAACAACAACAGCAGCAGCAACACTCCTCTTGGCTCCTTGACCCCAATTATTCATGGAGAAAAACCAACCTTCATCGCTCCAAAACTGCACCAGCTATGGCTGTGATCAGCGATTTCAATCACCAACCCACTGTGAAAAGACCCCAATTTGGTAGCCAGTCTATTGTGCACCAGGCTTTTATTCTTCTTGTTCTTTATTTGGCTCTAGGGGTGGTAATATATTGGTTCAATCGGCATAATTTTTCAGCAACTGAGACTCATCCTGTAGTGGATGCATTGTATTTTTGTATAGTGACCATGTGCACAATAGGATATGGTGACATTACTCCCAATAGTACTGCAACAAAGCTTTTCTCTATATTGTTTGTGTTGGTTGGTTTTGGTTTTATTGACATATTGCTCAGTGGGATGGTTAGCTATGTTCTTGATTTGCAGGAGAGTCATTTGTTGAGGGCAGTGAAGGGTAGGGGAGAAAAGGATGGGAGGTCTTATATAGTTGATGTGAAGAAAGGGAGGATGAGGATTAGGTTGAAGGTGGGGTTGGCATTGGGGGTTGTGGTGCTTTGTATTGGAATAGGTGTGGGGGTTATGCATTTTGTGGAAAGGCTTGGATGGTTGGATTCTTTTTATCTTTCAGTTATGTCTGTTACCACTGTTGGGTATGGAGACCATGCATTCAAGACCTTGCAGGGTCGAATCTTTGCTGCAATTTGGTTGCTTGTGTCAACGCTTGCAGTTGCCCGAGCATTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGACATAGGACGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCAGACATAGACAATAATGGCTTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAAGACATCATGCAGGTTAGCGAGAAGTTTGATAGACTAGATGCCGGCAACTGTGGAAAAATAACTCTTGCGGATCTCATGGAGAATCACAATTGA 1311 0.4409 MEEPLLPYFSPRKKPSPLAPQLCPLPEHDEMVLPLTPSQFKDRLIFGPSCASPRDPSPLAEALTLSYNSPKCASSSSTTQDLASALFDSQQSQQQQQQQQQQQQHSSWLLDPNYSWRKTNLHRSKTAPAMAVISDFNHQPTVKRPQFGSQSIVHQAFILLVLYLALGVVIYWFNRHNFSATETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQESHLLRAVKGRGEKDGRSYIVDVKKGRMRIRLKVGLALGVVVLCIGIGVGVMHFVERLGWLDSFYLSVMSVTTVGYGDHAFKTLQGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRTMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMENHN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2088 436 PRINTS Two pore domain K+ channel signature 195 223 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr3g2088 436 PRINTS Two pore domain K+ channel signature 314 323 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr3g2088 436 PANTHER TWO-PORE POTASSIUM CHANNEL 3 98 431 - -
Apr3g2088 436 Gene3D - 150 249 - -
Apr3g2088 436 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Apr3g2088 436 SUPERFAMILY Voltage-gated potassium channels 149 238 - -
Apr3g2088 436 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g2088 436 Gene3D - 281 344 - -
Apr3g2088 436 SUPERFAMILY EF-hand 374 432 IPR011992 -
Apr3g2088 436 SUPERFAMILY Voltage-gated potassium channels 267 372 - -
Apr3g2088 436 Pfam Ion channel 282 351 IPR013099 -
Apr3g2088 436 Pfam Ion channel 158 238 IPR013099 -
Apr3g2088 436 Gene3D - 345 436 - -
Apr3g2088 436 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 98 431 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2088 Apr-Chr3 36801192 36810708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2088 3 433 Ion Channels AT4G18160 62.697 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2088 K05389 - gmx:100804249 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2088 3 36801192 36810708 Apr3g2088 3 36801192 36810708 ECH