Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2066 ATGGTGAAAATTTCGGTTGGTGGATACGATGACGGAGAAGGACCCAGCAACCGAAGCCAGAAGCGACGCAGGGAAGAGGAAGAAGGAGAAGAAGAAGAAGAGCAGCATCCACAACAAAGCTTTGAAATTGTGGACCCTCCAATTGGAACCCAAGAAAACGAAGAACATGCTCCAACTGATGCTGGATCAAATGGGTCTGCAACCAATGACAGGGACAGGTCCATTCCCCTCTTCGTTTCTGACCCTGATGTCTTTGATTGCTGCATTTGCTATGAACCCTTGGGTGCTCCTGTTTTCCAGTGTGAGAATGGACATATTGCTTGCTCTAATTGCTGTGCCAGACTCAGGAACAAGTGTCCCATGTGCTTAATGCCCATTGGGTATAATCGTTGCCGAGCTATTGAGAAGGTGCTGGATGCTATTAAAATGTCATGCCTGAATGCACAATATGGCTGTAACGAGATGTTTAGTTACAGCAGGAAAAGTAACCATGAGAAGGAATGCAAATATCTACCATGTTTATGCCCGCATACAGGTTGCGATTATGTTGCTTCATCCAAGGAGTTATCCCTCCACTTCAGCCATAGACATGTAGGCTCTGGAACGCAGTTTATATATGATAGATTTTTCACTCTCTTCTTAAATACTGATCAAAAAACGGTTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTGTTGTTCACAATAATCATGAGCTTCTGGGGAATATAGTCTACATTAGTTGCATTGGCCCCAAGTCGATGGCAGGGTTTCATTACGATGTCTTGGCTAGGTCTCAGGGAAGCACTTTAATATTGCAATCTTTCACCAAGATCATTCAAGGCCAAATAGCTGATGCTCCTACAAAAAGGTTCCTTTTGATTCCATCTGGTTTTTTCCCTTCTGTACAACTCAAACTGGATATTCGCATCAAGTCACAGCATTAA 948 0.4304 MVKISVGGYDDGEGPSNRSQKRRREEEEGEEEEEQHPQQSFEIVDPPIGTQENEEHAPTDAGSNGSATNDRDRSIPLFVSDPDVFDCCICYEPLGAPVFQCENGHIACSNCCARLRNKCPMCLMPIGYNRCRAIEKVLDAIKMSCLNAQYGCNEMFSYSRKSNHEKECKYLPCLCPHTGCDYVASSKELSLHFSHRHVGSGTQFIYDRFFTLFLNTDQKTVVLQEKNDANLFVVHNNHELLGNIVYISCIGPKSMAGFHYDVLARSQGSTLILQSFTKIIQGQIADAPTKRFLLIPSGFFPSVQLKLDIRIKSQH* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2066 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 19 313 - -
Apr3g2066 315 MobiDBLite consensus disorder prediction 1 73 - -
Apr3g2066 315 SUPERFAMILY TRAF domain-like 141 300 - -
Apr3g2066 315 MobiDBLite consensus disorder prediction 56 73 - -
Apr3g2066 315 MobiDBLite consensus disorder prediction 15 29 - -
Apr3g2066 315 ProSiteProfiles Zinc finger RING-type profile. 87 122 IPR001841 -
Apr3g2066 315 ProSiteProfiles Zinc finger SIAH-type profile. 140 198 IPR013010 GO:0008270
Apr3g2066 315 Pfam Seven in absentia protein family 130 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr3g2066 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 19 313 IPR044286 -
Apr3g2066 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2066 Apr-Chr3 36618971 36621040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2066 63 212 C3H Transcription Factor Family AT2G41980 29.586 4.52e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2066 K04506 - gmx:100778869 496.893