Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2058 ATGGATAGCTATCAAGGTGATTTAACTGACATAATCCGTGCCAGTGGTGCATCATATCGCAGCTGCAGCACAGGCACTTCTTCATCTGAAGCTGCTCCTTTTTCTATTGATCACTGGCAGTTTTCTTCTGATTCCATGAATTTCTCTTCCATTTTGGAAGACCCTTGTGGTAACTTCGGTGATCCATTCTCAAACATGAGAGATCCCTTTCTATATGAGTTTGATGACATGCTTGGCTCTGCCCACTTTAACAGCGCAAGTTCTGTGGAAATTAGCAGTTCTGGGGGATTGGAAGAAGTAGCTTGTTTTGGTGGTGTTGGTAGTGGTAATACTTGTGTCTTGGCACAAAAGATTATGAAGGATGATATGATTCAGATCTCTTCCAATGCTGAGTTACCCATCTCGCCAGTGATGGATACTTTGTCAAGGGTAGTCAAGCCTTCTACTGTGGCTTCAGGTAAGATGAACAGTGCAAAGACCTCTAAAGATCATTGCTTGGGGGACAACACACAAGTGCAGATCTCATCTCCACGGTATCCAGGTTTTAAGCGAAGGAAGAGCCAGGCAAAGAAGTCCATTTGTGTTCCTGCACCAGCGGCTCCAAACAGCAAACAAAGTGGAGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCTTATCCAAGGGGTTATTATAGATGCAGCAGCTCAAAAGGTTGCCCTGCAAGGAAACAAGTAGAGAGGAGTAGAACTGACCCAAACATGTTGGTCATTACTTACACTTCAGAGCACAACCATCCATGGCCAACTCACAGAAATTCTCTTGCTGGTTCAACCCGTTCACAACTTTCCAAGAACAATAACGTTCCCGCTTCAAAGATTTCACGAACAACTATTTCTCAGCCCCGAAATGAGGAAGATCAACAAGAGGAGAGCAACAGTGACAGCAATGTGTCTCCACCAAATAACAGTGCATGTGTGAAGGAAGAGAAACACCTTGAGATGGAAGATGGAGAATTCAGTAAAGGAGCACTCTCTTACAAGCCAATATCTAAGGTGAAGTGCAACCAACTTGATCAGGACCTGTTTGCAGAATTGGGAGAAATTGAAGCACACTCGCTGAACCTATTTGATGATCAGCAAAGGGAATCCAAAGCTTTAGATTCATACAATCTCTTTGATTGGACCTAA 1200 0.4367 MDSYQGDLTDIIRASGASYRSCSTGTSSSEAAPFSIDHWQFSSDSMNFSSILEDPCGNFGDPFSNMRDPFLYEFDDMLGSAHFNSASSVEISSSGGLEEVACFGGVGSGNTCVLAQKIMKDDMIQISSNAELPISPVMDTLSRVVKPSTVASGKMNSAKTSKDHCLGDNTQVQISSPRYPGFKRRKSQAKKSICVPAPAAPNSKQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNSLAGSTRSQLSKNNNVPASKISRTTISQPRNEEDQQEESNSDSNVSPPNNSACVKEEKHLEMEDGEFSKGALSYKPISKVKCNQLDQDLFAELGEIEAHSLNLFDDQQRESKALDSYNLFDWT* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2058 399 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 5 399 - -
Apr3g2058 399 MobiDBLite consensus disorder prediction 264 305 - -
Apr3g2058 399 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g2058 399 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g2058 399 Gene3D WRKY domain 185 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g2058 399 MobiDBLite consensus disorder prediction 264 329 - -
Apr3g2058 399 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g2058 399 SUPERFAMILY WRKY DNA-binding domain 209 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g2058 399 MobiDBLite consensus disorder prediction 237 256 - -
Apr3g2058 399 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 399 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2058 Apr-Chr3 36573366 36576682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2058 1 380 WRKY Transcription Factor Family AT2G34830 42.381 7.80e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr3g2058 WRKY 9.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2058 - - gmx:100776919 496.893