Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2054 ATGATGGATTGGAGGCGAAAATCAAACTCCAAGAAGCACTCTCAGCCACAGCCACAGCCACAGCCACAGCCTCGCCTGCAGCGCCTCAACGCCAAGAAAGACTTCCATTACCAACCACCCACCACTCATTCTTCCACCCCTTCCTCTTCCTTCCACCAGTCCAGCTTCCGCCTCATGGGCCTCGACGACGGTGAATTCGACCGCATCTTCCAATCCTTGGGCCTCTCTGGGCCCGAAGACTTCTCCATCCCCACCGCTGACTGGGAAGCCCGAAAGGCTCGCGTTGCTTCCTCCAACCCTAAATTGGAAAATCGCACCTCTGATTCTCCAGGGGAACAGCACTCCAACCACCAGGTTCGGCTGGGAGGAGGTGGTGGTGGGATCAAGGGTGTTAGGCCTCCCCTTCTCGCTCCACCCCCAGCTGTTGATGGTTTGATTAGTGCTTTTGCTCCTCTCGATGATGTCGGCGCTGTTTCTGTTGCTGTTGCTGTTTCTGTTGATGTTGTTAATTCTCCTTCGTCTTCGGGTGAACATGATATTAGGGGTGTTGTTGGTAGAGTCAGGCATGGGGAGAGGAGCGTGCTTTTTACTGATTCTGGTTCATTTACTACTTCCCATGATGATGATAGTGATGTTGGTGGTGATAGGCCTTGCTCTGTTTCTGGTTCTGGGGTCGTTGATGAGTTGCTTCATTATGTTTCCTCCAATGGGTGGTTTAGAAGGACTTTCTCCTCTTGGCAAAAGGGTGACATTTTGGGAAATGGGTCCTTTGGAACGGTTTATGAAGGCTTCACCGATGATGGATTCTTTTTTGCAGTAAAGGAGGTGTCTTTGCTGGATGAAGGTAGCCAGGGAAAACAGAGTGTTTCCCAACTTCAGCAGGAAATATCTCTTTTGAGTCAGTTTGAACATAAAAACATAGTTCGATATTATGGCTCAGACAAGGACAAAAGTAAACTTTATATCTTCCTTGAGCTTATGTCAAAAGGGTCATTGGCAAGTCTCTATCAAAAGTATCGTTTAAACGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAATGGCTTGAAGTATCTTCATGATCATGATGTGGTCCACAGGGATATCAAGTGTTCCAATATACTGGTTGACGTAAGTGGGTCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTTAATGATGTTAAATCAAGCAAGGGCTCCCCCTACTGGATGGCCCCTGAGGTTGTTAACTTAAAGAACCAAGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGCAAAGGCAGCCTCCTTACTCTGATTTGGAAGGAATGCAAGCGTTATTTCGGATTGGCAGGGGTGAACCTCCACCTATTCCTGAATCTTTATCTAATGATGCCCGGGATTTCATTCTTAAATGCTTACAAGTTAACTCAAACAAACGCCCAACTGCAGCTGAGCTACTGGATCATCCATTTCTAAGGAGACCATTGCTCTCTCCCTTAAGTTCTGATTCTCCACATAGTAATATCTTTCGGTTATAA 1560 0.4654 MMDWRRKSNSKKHSQPQPQPQPQPRLQRLNAKKDFHYQPPTTHSSTPSSSFHQSSFRLMGLDDGEFDRIFQSLGLSGPEDFSIPTADWEARKARVASSNPKLENRTSDSPGEQHSNHQVRLGGGGGGIKGVRPPLLAPPPAVDGLISAFAPLDDVGAVSVAVAVSVDVVNSPSSSGEHDIRGVVGRVRHGERSVLFTDSGSFTTSHDDDSDVGGDRPCSVSGSGVVDELLHYVSSNGWFRRTFSSWQKGDILGNGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSVSQLQQEISLLSQFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILNGLKYLHDHDVVHRDIKCSNILVDVSGSVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGYGLAADIWSLGCTVLEMLQRQPPYSDLEGMQALFRIGRGEPPPIPESLSNDARDFILKCLQVNSNKRPTAAELLDHPFLRRPLLSPLSSDSPHSNIFRL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2054 519 PANTHER BNAA02G34600D PROTEIN 11 505 - -
Apr3g2054 519 MobiDBLite consensus disorder prediction 99 116 - -
Apr3g2054 519 Gene3D Transferase(Phosphotransferase) domain 1 244 515 - -
Apr3g2054 519 MobiDBLite consensus disorder prediction 92 135 - -
Apr3g2054 519 Pfam Protein kinase domain 247 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2054 519 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 11 505 - -
Apr3g2054 519 ProSitePatterns Protein kinases ATP-binding region signature. 252 274 IPR017441 GO:0005524
Apr3g2054 519 ProSiteProfiles Protein kinase domain profile. 246 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2054 519 SUPERFAMILY Protein kinase-like (PK-like) 232 509 IPR011009 -
Apr3g2054 519 MobiDBLite consensus disorder prediction 37 54 - -
Apr3g2054 519 SMART serkin_6 246 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g2054 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Apr3g2054 519 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2054 Apr-Chr3 36525667 36532841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2054 22 97 MAP Kinase Kinase Kinase AT4G08500 36.667 4.63e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr3g2054 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2054 - K13414 gmx:100820552 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2054 3 36525667 36532841 Apr1g1159 1 20112613 20117476 PCT