Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2053 ATGGAAATTGATCTCTCTTTGAAGATAGATACTGATGATGAGCAAAAAGAAGAAAAAGCAGAAGCAGCAAAGGAAGATGAGCGAGTAATAGAAGATGACGAGGAAGAAATGGCACAGATATTATCTGATAATAAGGAAGAAGTCCCTGAAGCCACATCAGGTGTAATAGAAGATGATGCATCAGTGGTAGAAACATCTTTGCAAGATAACACAAAAACAAAAGAGCTAAGTGAAATACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAATTCTGAGAAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAAATGAAATTTTCAGCAATCCAGGAAAACAATAAAAGAAAGGATCATCAAATTTCTCTCTCACTTCAAGACAATGCAACCACCAGCGACGAAGGACCATCGAGAATTCTTGAGATCTTTAATAAAAAAATTCAAAGCGCTTCGTCTCCACCAAACACGGATGGTATTATAAGCGAGGGTGAATTGGGTTTATCGCTAAGGTTGCAAACAAGCACAAGTCAAATAGAAACTGATGAGGGAAATAAGGAAGACAAAAAGGAACAATTGGCAAGTTTTGCATCAGTGCAGAACAAGTTGCAGCGGACACATGAATTACCTGGTATTACTACCCATGCTGCTTCCCCTCCTAACAGAAAGGCTAGGGTTTCGGTCAGAGCAAGATGCGAGGCTGCCACAATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCGAAAGGAAATCCATGTCCACGAGCCTATTATCGTTGCACCGTAGCCCCTGGCTGCCCCGTCAGGAAACAGGTTCAAAGGTGTATAGATGACATGTCCATTCTAATTACAACCTATGAAGGAACACACAACCATCCACTCCCAGTGGGTGCAACTGCTATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGACTCAAGCAACCCTATTTCAGATGGTACCTCTAGTTTCATCCAAACACCCATTCCTTACAATAGCTTCCACCCATTAACCCCAGCTTCCAATTATAGAAGCTTAAACCCCAATGATCCATCCAAAGGGATTGTTCTTGATCTCACCAATAATCTCAGTGAACCGCTACGTTTTTCTACTGGCAGCTCGTCCAACACCACAACCGAGTCTCGTTTTTCTTGGATGCCAAACAAATACCAAGGTGGTGCTATTGCAATGAACAATTTTCACAAGCCTATACCACTGGATCATGATAGAATTTGGAAAGGAGAAGAAAGCAAGCCACTAGAGGACAATGTGTCGGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCAGCGGCCATAACATCACTCATGAATAAAGAGAGCCACCCTACTCATCCTATAGGAACTTCCTTTGGTCATAGGAGTGGGCAAAATGGTAGCTAG 1434 0.4205 MEIDLSLKIDTDDEQKEEKAEAAKEDERVIEDDEEEMAQILSDNKEEVPEATSGVIEDDASVVETSLQDNTKTKELSEIQMEMESMKEENKILRKVVEQTMKDYYDLQMKFSAIQENNKRKDHQISLSLQDNATTSDEGPSRILEIFNKKIQSASSPPNTDGIISEGELGLSLRLQTSTSQIETDEGNKEDKKEQLASFASVQNKLQRTHELPGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFIQTPIPYNSFHPLTPASNYRSLNPNDPSKGIVLDLTNNLSEPLRFSTGSSSNTTTESRFSWMPNKYQGGAIAMNNFHKPIPLDHDRIWKGEESKPLEDNVSAIASDPKFRVAVAAAITSLMNKESHPTHPIGTSFGHRSGQNGS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2053 477 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g2053 477 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 2 463 - -
Apr3g2053 477 MobiDBLite consensus disorder prediction 457 477 - -
Apr3g2053 477 Coils Coil 76 103 - -
Apr3g2053 477 Gene3D WRKY domain 225 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g2053 477 Pfam WRKY DNA -binding domain 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g2053 477 MobiDBLite consensus disorder prediction 1 26 - -
Apr3g2053 477 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 463 IPR044810 GO:0003700
Apr3g2053 477 Coils Coil 16 36 - -
Apr3g2053 477 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g2053 477 MobiDBLite consensus disorder prediction 1 28 - -
Apr3g2053 477 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2053 Apr-Chr3 36517230 36519630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2053 12 363 WRKY Transcription Factor Family AT1G68150 45.682 1.12e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr3g2053 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2053 - - var:108321024 742.651