Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2050 ATGGAAGAAATCGTTTTTCTTCTGTTCTGGCAAACATTTGGAGGTAAGAAAATCAATTTGCTGGTGTCAACACTACGTGAATTCAACCTTGGATGGCTGGAAGATTGGTATTTTTGCGGTTTGTCAATTGCTCCTCAATGTTTCCTGATGCTTACTGTTTATCCATATAGTATTCCACCTTGTGGATTAGGTTTGGTTATTGATATTGTTGTTAACTTTCACAAGAAAGAGATATGCGAAGCTGTTACTATCATTGAAACTCGTCCTTTGGTTGTTGTTGGAGTGGTGGGATATGCGAAGACTCCTTGTGGCCTTTGTACTGTGCATGCTGTTTGGGCTCAGCATCTAAGAGAGGAAGTTAAAAGACGTTTCTACCAGAACTGGTGCAAATATAAGAAAAGGCTTTCCCCAGGTATACGAAAAAATAAAAAGAAAGAAACTGAGGAAGGAAAGAAAGACATTGAATCTCAACTTGGGAAGTTGAAGAAATATGCAACTTACATTCGTGTTCTGGCTCATACTCATATAAGGAAGTTGAAGGGTCTAAAGCCGAGGAAGGCACATTTGATGGAGATTCAAGTCAATGTTGGGACAGTAGCACAGAAAGTGAACTTTGCATATGGCTTCTTTGAGAAGCATATCCCAGTGGATGCAGTTTTCCAAAAGGATGAGATGATAGACATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGTGTCGTAACTCGATGGGGTGTCACTTGCCTTCAACGCAAGACCCACAAAGCTTTAAGGAAGGTTGCTTGTATTGGTGCTTATCATGCCAGAGCTGGTCAGAATGGATATCATAAGTAG 834 0.4065 MEEIVFLLFWQTFGGKKINLLVSTLREFNLGWLEDWYFCGLSIAPQCFLMLTVYPYSIPPCGLGLVIDIVVNFHKKEICEAVTIIETRPLVVVGVVGYAKTPCGLCTVHAVWAQHLREEVKRRFYQNWCKYKKRLSPGIRKNKKKETEEGKKDIESQLGKLKKYATYIRVLAHTHIRKLKGLKPRKAHLMEIQVNVGTVAQKVNFAYGFFEKHIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTCLQRKTHKALRKVACIGAYHARAGQNGYHK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2050 277 Gene3D Ribosomal protein L3, domain 3 212 273 IPR044892 -
Apr3g2050 277 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 72 277 IPR045077 GO:0003735|GO:0005840|GO:0006412
Apr3g2050 277 SUPERFAMILY Translation proteins 73 276 IPR009000 -
Apr3g2050 277 ProSitePatterns Ribosomal protein L3 signature. 220 243 IPR019926 -
Apr3g2050 277 Gene3D - 89 211 - -
Apr3g2050 277 Pfam Ribosomal protein L3 71 276 IPR000597 GO:0003735|GO:0005840|GO:0006412
Apr3g2050 277 PANTHER 60S RIBOSOMAL PROTEIN L3-1 72 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2050 Apr-Chr3 36495222 36496939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2050 73 276 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 70.283 7.36e-94 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2050 K02925 - gmx:100792174 317.005