Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2048 ATGGTTGATTCTCGATGCTTATATCTTTTAAGATTCATCATGTTAACGATTTTAGTTTTTTCATCTAAGGTAGAAAGGATGTCTCACCGAAAGTTCGAGCACCCTAGACATGGTTCCCTTGGCTTTCTCCCAAGGAAACGAGCTTCTCGTCACCGCGGAAAAGTGAAAGCTTTCCCCAAAGATGATCCAAGTAAACCGTGCAGATTGACTGCCTTTTTGGGTTACAAGTCTGGGATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAAACTTCACAAGAAAGAGACATGCGAAGCTGTTACTATCATTGAAACTCCTCCACTGGTTGTTGTTGGAGTGGTGGGATATGTGAAGACACCTCGTGGCCTTCGCACTCTGAATGCTGTTTGGGCGCAGCATCTAAGTGAGGAAGTTAAAAGACGTTTCTACAAGAATTGGAGCAAATCTAAGAAAAAGGCTTTCACCAAGTACACAAAGAAATATGAAACTGAGGAAGGAAAGAAAGACATTGAATCTCAACTTGAGAAGTTGAAGAAATATGCAACTGTCATTCGTGTTCTGGTTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAAGCACATTTGATGGAGATTCAAGTCAATGGTGGGACCATAGCACAGAAAGTGGACTTTGCATATGGCTTCTTTGAGAAACAAATCCCAGTGGATGCAGTTTTCCAGAAGGATGAGATGATAGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTAACTCGATGGGGTGTCACTCGCCTTCCACGCAAGACCCACAGAGGCTTAAGGAAGGTTGCTTGTATTGGTGCTTGGCATCCTGCACGTGTTTCTTTCACTGTTGCCAGAGCTGGTCAGAATGGATATCATCACCGAACTGAGTTGAATAAAAAGATTTACAAGGTTGGCAAGTCAGGTCTAGAGTCACATTCAGCCATCACTGAATTTGACAGGACGGAGAAGGATATCACTCCTATGGGTGGATTCCCTCACTATGGAGTTGTAAAGGATGATTATATTATGGTCAAAGGATGCTGTGTTGGACCCAAGAAACGAGTTATCACACTTAGGCAGTCCCTACTCAAGCAGACATCTCGAGTAGCTCTTGAAGAGATCAAACTAAAGTTCATTGACACCTCGTCTAAGTTTGGACATGGGCGCTTCCAGACCACGCAGGAAAAGCAGAAGTTTTATGGTCGGTTGAAGGCGTAA 1248 0.4327 MVDSRCLYLLRFIMLTILVFSSKVERMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKSGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNAVWAQHLSEEVKRRFYKNWSKSKKKAFTKYTKKYETEEGKKDIESQLEKLKKYATVIRVLVHTQIRKLKGLKQKKAHLMEIQVNGGTIAQKVDFAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKSGLESHSAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2048 415 Gene3D Ribosomal protein L3, domain 3 27 300 IPR044892 -
Apr3g2048 415 SUPERFAMILY Translation proteins 30 396 IPR009000 -
Apr3g2048 415 Gene3D - 109 233 - -
Apr3g2048 415 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 27 415 IPR045077 GO:0003735|GO:0005840|GO:0006412
Apr3g2048 415 ProSitePatterns Ribosomal protein L3 signature. 238 261 IPR019926 -
Apr3g2048 415 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 27 415 - -
Apr3g2048 415 Pfam Ribosomal protein L3 27 396 IPR000597 GO:0003735|GO:0005840|GO:0006412
Apr3g2048 415 Gene3D Translation factors 70 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2048 Apr-Chr3 36487013 36491243 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2048 27 413 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.788 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2048 K02925 - gmx:100792174 711.064