Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2040 ATGAAGGGTGTATGTAATCTATTGCAAGAATTGAAAGCAATCGTTCTAATGGTGTTTGTGCAGATTGTATATGCTGCGGGCAATGTGCTCTACAAGCTCGCCATTAACGATGGAATGAGCATCACTGTAGCCACTGTCTACCGCCTCATTTTGGCATCGGCTTTCACAATCCCCATTGCTCTTATCTTTGATAGGAAGAAGAGATCAAAGATTACTTGGAGAGTACTGTTTTTGGGATTTCTTTGTGGATTATTTGGGGGAAGTTTATTTCTAAACCTTTATTTTGAGGGCCTGGCTTTGACTTCAACAACGTTTATGATGGCAATGCTCAACCTTAATCCAGGCATCACCTTTATCATGGTCATATTGTTTGGATTCGAAAAATTAAATTTGGGAGCAGCAGAAGGAAGGGCCAAGGTGATGGGGACAATAATTGGAATTAGTGGGGCAATGATTTTGACTTTTGTCAAAGGGGTAGAAATTAATATTTGGTGTTCAAAAGTCAACCTCATTCATCCACATAAAAGCCAAAATGGGTGGCATGGTGATTTTAGTAACAAATTTTTGGGTGTTCCATGTGCCATAGGAAGCTGCTGCTCTTTTTGTTTGTGGTATATCATTCAGGCTAAGTTGAATGAAGAATACCCAAGCCATCTCTCAAGCTCAGCTTTGATGTCCATAATGGGAACAATACAGGCCGTTGTTTTTGCTCTCTGTATTGAAAGGGATTGGAGCCAATGGAAGCTGGGTTACAATATCACTCTTCTAACAGTGGCTTATTCGGGAATAATGAATTCTGGTATAGTAGTCATTGTTATTGCCTGGTGCATAAAGATGAGAGGTCCTCTATTTGCATCTATTTTCGGCCCACTGCAACTTTTACTGGTGGCTGTCGCTAGTTATTTGATGTTGAATGAGAAGTTATATTTAGGAAGTTTACTTGGGGCAGCGTTGATCGTATGTGGCCTATACACAGTGCTTTGGGGTAAAGGCAAAGAAATAAAAAAGAAGACTCATTTAGTGTCATCAGAAACCGCCAGAGAATCCGAAACTGTTGAGGTTGCATGTTATGTCCACGAGATATGA 1086 0.4033 MKGVCNLLQELKAIVLMVFVQIVYAAGNVLYKLAINDGMSITVATVYRLILASAFTIPIALIFDRKKRSKITWRVLFLGFLCGLFGGSLFLNLYFEGLALTSTTFMMAMLNLNPGITFIMVILFGFEKLNLGAAEGRAKVMGTIIGISGAMILTFVKGVEINIWCSKVNLIHPHKSQNGWHGDFSNKFLGVPCAIGSCCSFCLWYIIQAKLNEEYPSHLSSSALMSIMGTIQAVVFALCIERDWSQWKLGYNITLLTVAYSGIMNSGIVVIVIAWCIKMRGPLFASIFGPLQLLLVAVASYLMLNEKLYLGSLLGAALIVCGLYTVLWGKGKEIKKKTHLVSSETARESETVEVACYVHEI* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2040 361 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Apr3g2040 361 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Apr3g2040 361 PANTHER WAT1-RELATED PROTEIN 8 352 IPR030184 GO:0016021|GO:0022857
Apr3g2040 361 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 8 352 - -
Apr3g2040 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 332 - -
Apr3g2040 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2040 Apr-Chr3 36389957 36393608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2040 11 350 Nodulin-like Gene Family AT1G25270 40.634 5.97e-90 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2040 - - gmx:100803545 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2040 3 36389957 36393608 Apr3g2040 3 36389957 36393608 ECH
Apr1g1169 1 20205492 20207488 Apr3g2040 3 36389957 36393608 PCT