Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2039 ATGAAGAGAGCATGTAATTTATTGCAAGAATTAAAACCAGTCGTGTTAATGGTGCTAGTGCAGATTGTATATGCTGCCGGGAATGTGATCTACAAGCTTGCCATAAATGATGGAATGAACATGACGGTAGCTGCTGCCTACCGTCTCATTTTAGCATCAGCTTTCACTATCCCCGTTGCTCTTATTTTTGATAGGAAGAAGAGACCCAGGATAACTTGGAGGGTGTTGTTTATGGCATTTCTTTGTGGATTGTTTGGAGGAAATTTATTTTTAAACCTTTATACTGAGGCTCTAGCTTTGACGTCTGTAACGCTTATGTTGACCGTGGTCAACCTTATTCCAGGCATCACTTTTGTTATGGCTGTATTATTTGGATTGGAAAAATTAAACTTTGGAGCAGCAGAAGGAAAGGCGAAAGTGGTGGGAACAATAATTGGAATTAGTGGGGCAATGGTGTTGATCTTTGTCAAAGGATTCGAAATTAATATTTGGTCTCCTAAAATCAACCTTATGCATCCACATCAGAACCAAAATGGGCATATGGCATCGCATCTTGATTTTAGTAATACACTGTTAGGTGTTTCGTGTGCCATAGGAAGCTGCTGCTCTTTTTCTTTGTATTTCATCGTTCAGGCTAAGATGATTGAAGCATACCCAAGCTTCCACTCAAGCATAGCTTTGATTTGCACTATGGGAGCGATACAGGCCGTTGTTGTTGCTCTCTTTTTTGAAAGGGATTGGAACCAATGGAAGCTGAGTTACAATATCAGGCTTCTAACTGTGCTTTATACGGGAATAGTAAATTCTGGAATAGTAGGCGTTGTTATTGTCTGGTGTATAAAGATAAGAGGCCCTTTATTCGTGTCTATTTTCAACCCACTACAGCTTTTACTAGGGGCTGTTGCTGCTTATTTGACGTTGAATGAGAAGTTGTATTTAGGAAGTTTGCTTGGAGCAGTGCTGATCGTATGTGGCTTATACACAGTGCTTTGGGGTAAGGGCAAAGAAGCCGAAAAGATGACTCAATTAGAAACAACCAGAGTCTAA 1047 0.4021 MKRACNLLQELKPVVLMVLVQIVYAAGNVIYKLAINDGMNMTVAAAYRLILASAFTIPVALIFDRKKRPRITWRVLFMAFLCGLFGGNLFLNLYTEALALTSVTLMLTVVNLIPGITFVMAVLFGLEKLNFGAAEGKAKVVGTIIGISGAMVLIFVKGFEINIWSPKINLMHPHQNQNGHMASHLDFSNTLLGVSCAIGSCCSFSLYFIVQAKMIEAYPSFHSSIALICTMGAIQAVVVALFFERDWNQWKLSYNIRLLTVLYTGIVNSGIVGVVIVWCIKIRGPLFVSIFNPLQLLLGAVAAYLTLNEKLYLGSLLGAVLIVCGLYTVLWGKGKEAEKMTQLETTRV* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2039 348 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 335 - -
Apr3g2039 348 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020|GO:0016021
Apr3g2039 348 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Apr3g2039 348 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 8 344 - -
Apr3g2039 348 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Apr3g2039 348 PANTHER WAT1-RELATED PROTEIN 8 344 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2039 Apr-Chr3 36385759 36390381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2039 11 347 Nodulin-like Gene Family AT1G25270 39.589 3.27e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2039 - - gsj:114424758 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2039 3 36385759 36390381 Apr3g2039 3 36385759 36390381 ECH
Apr3g2039 3 36385759 36390381 Apr1g1169 1 20205492 20207488 PCT
Apr1g1170 1 20214719 20216919 Apr3g2039 3 36385759 36390381 PCT