Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2038 ATGGAATCCGAATATATAAAATCCATTGCAGAGCTTCGCTTTGACACCATTATCTTCCCTCTTTACTTGGGTTTGGTTAACATGGTGGAGAGCGTTTGTGATTTGTGGGAAACGCTGAAAACAGACATGATAATGGTGTTAGTGCAGATTGCATATGCTGCGGTGAATGTTCTATACAAGCTTGCCATTAACGATGGAATGAGTATGAGGGTTGCTACTGCCTATCGCCTCATTTTTGCATCCGCTTTCACTGTTCCTGTGGCTCTTTTCTTTGATAGGAAGAAGAGACCGAAGATAACTTGGAGGGTGCTATTATTGGCACTTGTTTGTGGATTGTGTGGGGCAAGTTTATTCCTAAACCTTTATGCAGAGGGCCTGGCTTTGATGTCAGCAACCTTTATGATGGCCACCATCAACCTTGTTCCTGGCATTACCTTCGTTATGGCTCTATCCTTCGGATTGGAAAAGTTAAATTGGGGATTAGCGGAAGGAAGGGCCAAAGTGATAGGCACAATAGTTGGAATTAGTGGAGCAATGATGATTGCCTTTTTCAAAGGGATAGAAATTAATATTTGGTCTTCCCAAATGAACCTTATGCATCCTCATAAGGACCAAAACGGGCATGTAGCATTGCACCATGGCTTTCGACATAAACTGTTGGGTGTTTCATGTGCCATAGCAAGTTGCTGCATTTATTCTTTGTGGTTCATTGTTCAGGCTAAAATGATTGCAGAATATCCAAGCCCTCACTCAAGTGCAGCTTTAATGACCACAATGGGAGCTATACAGGCCACTGTTTTTGCTCTTTGTGTTGAGAAGGATTGGAACCAATGGAAACTTGGTTACAATATCAGGCTTCTCACTGTGGCTTATGCGGGAATAGTGACCTCTGGAATAGTGTCTGTGGTTATTGCCTGGTGCATAAAGAAAAGAGGCCCTATATTTGCGTCTGCTTTTAATCCTCTACAGCTTTTACTTGTGGCTATCGCTGCTTATTTAATGTTGGATGAGAAATTATATTTGGGAAGTGCGCTTGGAGCAGTGTTAATTGTGTGTGGTCTGTACGCGGTGCTTTGGGGTAAGGCACAAGATTTAAGAAAGAAATCGCAGCTAATGCCATTAGAAAACACCCAAGAGTTGGAAAATGTTGAAGTTGTAGTTACGTCCACGCCCGTAGATCATAATAAAAGTGTCCAAAGCATTCAGAGTCAAACCCCTGCAAACGAGAATGCCGTAACGATCAATCACTGTTATTTATCAAAAACTTGA 1269 0.4208 MESEYIKSIAELRFDTIIFPLYLGLVNMVESVCDLWETLKTDMIMVLVQIAYAAVNVLYKLAINDGMSMRVATAYRLIFASAFTVPVALFFDRKKRPKITWRVLLLALVCGLCGASLFLNLYAEGLALMSATFMMATINLVPGITFVMALSFGLEKLNWGLAEGRAKVIGTIVGISGAMMIAFFKGIEINIWSSQMNLMHPHKDQNGHVALHHGFRHKLLGVSCAIASCCIYSLWFIVQAKMIAEYPSPHSSAALMTTMGAIQATVFALCVEKDWNQWKLGYNIRLLTVAYAGIVTSGIVSVVIAWCIKKRGPIFASAFNPLQLLLVAIAAYLMLDEKLYLGSALGAVLIVCGLYAVLWGKAQDLRKKSQLMPLENTQELENVEVVVTSTPVDHNKSVQSIQSQTPANENAVTINHCYLSKT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2038 422 PANTHER WAT1-RELATED PROTEIN 39 382 IPR030184 GO:0016021|GO:0022857
Apr3g2038 422 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 39 382 - -
Apr3g2038 422 Pfam EamA-like transporter family 220 358 IPR000620 GO:0016020|GO:0016021
Apr3g2038 422 Pfam EamA-like transporter family 42 182 IPR000620 GO:0016020|GO:0016021
Apr3g2038 422 SUPERFAMILY Multidrug resistance efflux transporter EmrE 75 185 - -
Apr3g2038 422 SUPERFAMILY Multidrug resistance efflux transporter EmrE 278 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2038 Apr-Chr3 36377508 36381715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2038 29 415 Nodulin-like Gene Family AT1G68170 40.827 2.37e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2038 - - gsj:114424758 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2038 3 36377508 36381715 Apr3g2038 3 36377508 36381715 ECH
Apr3g2038 3 36377508 36381715 Apr1g1170 1 20214719 20216919 PCT
Apr1g1171 1 20228419 20233516 Apr3g2038 3 36377508 36381715 PCT