Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2035 ATGGCCGGAAGTGTTGAAGTTTTAGCTCATGATTCTAGCATCAATGGAGCAATGAAATCGCTGCATGAGGATTTCACTCCAACAACATTTATCCAAGATCTTGTGCCACACATAATTGGAGAGAATGGCATTGGCAACAGAGGGGATCATAATAGTGCAGACAAGGGGGAAAGAAAGATAGTACTGGGCAAAAATATTCATACCATGTGCCTTGAAGTCACGGAGCCTGATGTAGATGATGAGGTTACTGGAGAAAGGGAAGCTTATATGGCAAGTGTGTTGGCTAGATACAGAAGATCTCTGATAGAAAGGACCAATTATCATTTAGGTTACCCCTATAATTTGGATTTCGACTATGGTGCACTCTGTCAACTTCAGCACTTTTCCATCAACAACTTGGGAGATCCATTTATTGAAAGCAACTATGGTGTCCACTCAAGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTTGCTCGGTTGTGGGAACTGGAGAAAAATGAGTATTGGGGCTACATAACAAATTGTGGCACAGAAGGCAATCTCCATGGCATCTTAGTTGGGAGAGAGGTCTTCCCAGATGGCATTTTATATGCTTCACAAGAATCACATTATTCTGTTTTCAAAGCTGCTCGTATGTACAGAATGGAATGTGTGAAGATTAACACTCTTTGTTCTGGTGAGATTGATTGTGATGATTTCAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATCTGGTTATAAAGAAGCTTGAAGAAGCAGGACTTTCACATGACAGGTTCTACATCCATTGTGACGGGGCTTTGTTTGGTCTCATGTTGCCTTTTGTCAGACGTGCTCCAAAAGTTTCTTTCAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGCCACAAATTTGTGGGGTGTCCCATGCCTTGTGGTGTGCAGATAACACGATTGGAACATGTGAAGGCTCTTTCTAGCAATGTAGAATACCTTGCTTCAAGGGATGCCACAATCATGGGAAGTAGAAATGGCCATGCTCCCTTATTCCTATGGTATAGTTTAAACAGGAAAGGGTACAGAGGGTTTCAGAAAGAAGTGCAGAAGTGTTTAAGGAATGCACACTACTTCAAAGATCGCCTCGTAAATGCTGGGATTGGAGCGATGCTTAATGAACTAAGCAGCACTGTTGTATTTGAGAGGCCACATGATGAGGAGTTTGTGCACAAGTGGCAACTGGCATGCCAAGGGAGCATTGCACATGTTGTAGTAATGCCAAGTGTCACCATAGAGAAACTTGATGATTTTCTAAATGAACTTGTGCAGAAGCGTGCTGTGTGGTTTAGAGATGGAAAGTCTCAACCTTATTGTATAGCATCTGCTGTAGGCCAGAAAAATTGCCTGTGCGCTTTGCATAGGTGA 1458 0.4266 MAGSVEVLAHDSSINGAMKSLHEDFTPTTFIQDLVPHIIGENGIGNRGDHNSADKGERKIVLGKNIHTMCLEVTEPDVDDEVTGEREAYMASVLARYRRSLIERTNYHLGYPYNLDFDYGALCQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKINTLCSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGLSHDRFYIHCDGALFGLMLPFVRRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVKALSSNVEYLASRDATIMGSRNGHAPLFLWYSLNRKGYRGFQKEVQKCLRNAHYFKDRLVNAGIGAMLNELSSTVVFERPHDEEFVHKWQLACQGSIAHVVVMPSVTIEKLDDFLNELVQKRAVWFRDGKSQPYCIASAVGQKNCLCALHR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2035 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Apr3g2035 485 Gene3D Aspartate Aminotransferase, domain 1 367 456 IPR015422 GO:0003824
Apr3g2035 485 PANTHER SERINE DECARBOXYLASE 1 485 - -
Apr3g2035 485 PANTHER - 1 485 - -
Apr3g2035 485 SUPERFAMILY PLP-dependent transferases 98 454 IPR015424 -
Apr3g2035 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 406 IPR002129 GO:0016830|GO:0019752|GO:0030170
Apr3g2035 485 Gene3D - 124 366 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2035 Apr-Chr3 36354956 36358238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2035 208 393 Calmodulin-binding Proteins AT5G17330 24.615 3.93e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2035 K25193 - gmx:100792053 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2035 3 36354956 36358238 Apr1g1178 1 20311760 20315425 PCT