Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr3g2032 | ATGTCAGATGTGGAAGAGTATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACGTCAGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGCCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCATCTAGAGATGATGGTGATCGCTACCGGGAGCGTGGTCGTGATCGTGATCGTGATCGTAACCGGGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGGGAATGCCCCGGTGAAGGGGCAAGAGGGGGAAGTTATGGTGGTAGGGAAAGTCGATATGGTGGAAGCAGTGCAGGTGGTCACTATGGTCCAGATAGAAATGCAGATCGTTCTTCAGGTGGGCGCTACAAGGATGCTGGTAATCACGGAGATTCTGGAAATGATCGATATTATCGTGATCGTGCAGGACCGTACGAGCGACGTGGATCAGGAGGCTTTCGTTGA | 624 | 0.4647 | MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDRAQPQQGSSRDDGDRYRERGRDRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPGEGARGGSYGGRESRYGGSSAGGHYGPDRNADRSSGGRYKDAGNHGDSGNDRYYRDRAGPYERRGSGGFR* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr3g2032 | 207 | SMART | c2hcfinal6 | 122 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr3g2032 | 207 | Gene3D | - | 119 | 174 | - | - | |
| Apr3g2032 | 207 | Pfam | Zinc knuckle | 122 | 137 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr3g2032 | 207 | Gene3D | - | 2 | 118 | IPR012677 | - | |
| Apr3g2032 | 207 | SUPERFAMILY | Retrovirus zinc finger-like domains | 114 | 139 | IPR036875 | GO:0003676|GO:0008270 | |
| Apr3g2032 | 207 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 79 | IPR000504 | GO:0003723 | |
| Apr3g2032 | 207 | MobiDBLite | consensus disorder prediction | 168 | 200 | - | - | |
| Apr3g2032 | 207 | ProSiteProfiles | Zinc finger CCHC-type profile. | 123 | 137 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr3g2032 | 207 | PANTHER | TRANSFORMER-2-RELATED | 1 | 176 | - | - | |
| Apr3g2032 | 207 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
| Apr3g2032 | 207 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
| Apr3g2032 | 207 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 1 | 176 | - | - | |
| Apr3g2032 | 207 | MobiDBLite | consensus disorder prediction | 88 | 113 | - | - | |
| Apr3g2032 | 207 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 117 | IPR035979 | GO:0003676 | |
| Apr3g2032 | 207 | MobiDBLite | consensus disorder prediction | 76 | 207 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr3g2032 | Apr-Chr3 | 36328500 | 36332607 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr3g2032 | 10 | 93 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 35.714 | 9.50e-11 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr3g2032 | - | - | gmx:100815224 | 320.857 |