Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2027 ATGGGAGATAACAATGTCAATCTTCCACCCGGGTTTCGCTTCTATCCCACAGATGAAGAGCTTGTTGTTCATTTTCTTCAAAGAAAAGCATCACTTTTACCTTGCCATCCAGATGTCATTCCTGATCTTGATCTCTACCCATATGACCCTTGGGAACTTCATGGTAGAGCTTTGGCTGAGGGAAAGCAATGGTACTACTATAGCAGAAGGACACAAAATAGGATCACTAGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGGCAGTGGTTACAAGCTCAAGCAACAAAAGAGTTGGCATGAAGAAATATTATGTGTTTCATATGGGAGTAGCACCGGATGGTAACAGAACCAATTGGATAATGCAAGAATATTGTCTATTAGATTCTGGTTCCTCTAGCAGATCATCCAAAAGAAAAGCGCAACCAAAAACAGACCATAGTAAATGGGTGATATGTCGAGTTTATGAGCGGGATAACGATAATGATGATGATGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAATTAGCTTGCCAAATTAG 573 0.4049 MGDNNVNLPPGFRFYPTDEELVVHFLQRKASLLPCHPDVIPDLDLYPYDPWELHGRALAEGKQWYYYSRRTQNRITSNGYWMPMGMEEAVVTSSSNKRVGMKKYYVFHMGVAPDGNRTNWIMQEYCLLDSGSSSRSSKRKAQPKTDHSKWVICRVYERDNDNDDDDGTELSCLDEVFLSLDDLEEISLPN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2027 190 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Apr3g2027 190 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Apr3g2027 190 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Apr3g2027 190 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Apr3g2027 190 PANTHER NAC TRANSCRIPTION FACTOR 56 5 187 - -
Apr3g2027 190 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2027 Apr-Chr3 36271570 36272431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2027 6 158 NAC Transcription Factor Family AT1G52890 42.857 1.52e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g2027 NAM 5.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2027 - - gmx:100788893 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2027 3 36271570 36272431 Apr1g1185 1 20385603 20386515 PCT