Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2024 ATGGAAAATGCGTGGAGCAACAGCAAGATGAAGGTCCTGAAGCTGAGGACTTTGCACGAAAATGTTCCACCGTTGCAGATCGAGTTGGATGACAGAAGAGGACGCTATCTCCAACCAACGACTATGAGTCCACGATTTCAACCGTACACCGAGAACATCGACGTCGGCTCGCCGTTCGCGCGCTACTTCTTCGCCGGATCTCCACTTTCCGGGAAGGTCGCGCCCGCCGGCGAAGCCTTCACTCCTCCGACGTTTGGCTCCAGCAAGTACAGGACTGCAAAAGTGCAGCCGTACTGCGGCAACAGTTCGGGGAGCAGTAGCTTCGGTTCTCGCGGTAGATTGTCGCCCTCGCCGCTTTCGTCAATTGAGAACTTGGAGATCGCGTCGCTCGTGTCGCCGTCGATGTACAGAACGCCGGTAAAGGGGGACGATGACGTTATCGTGATGGATGATATTCTGGTGAGGCCAATGTCGGGAGGAAAGAACGGAAGGTCATCATCTTCCTCCGGCCGGGGTTCGTCCTCATCGTCGTCGACGTCGAAGAGCGTGTTGAAGACGGAGATTTGCAGGGCGTGGGAGGAAACTGGAAACTGCCGCTACGACTCCAAATGCCAGTTTGCACACGGGAAAGAAGAGCTTCATCCAAGTCGTCCCTCCATGAAGAGCAAATCTGGGGCCCAGACTAGCAAATCATCTATTAGAGCAGGATCCAGCTTGTACGGCCCAAGCAGTCGAATTGTTCGTCAGCAGGGTGCAGTAGCTGAATATGTCCGTATGACATTGTCCCAACCAACTTCACCTGATCTTCATCATAGCCGAGCCAATTTCAAGACTTTAAATGACTGGTCACCCGTGGATGATGGTATTGAGGTTTTCCTCCCATCAAATGGTTCAGATAAAACTCCATCTAGGGAAGAGGTTAATGCATACATTTCCAGTATTCCCCATGGCGTGACTGCTAAAAGGAGACTACCAGTATTTGCAGCACTTTGCCTGGGGCAACGATCCCCATGA 1014 0.5256 MENAWSNSKMKVLKLRTLHENVPPLQIELDDRRGRYLQPTTMSPRFQPYTENIDVGSPFARYFFAGSPLSGKVAPAGEAFTPPTFGSSKYRTAKVQPYCGNSSGSSSFGSRGRLSPSPLSSIENLEIASLVSPSMYRTPVKGDDDVIVMDDILVRPMSGGKNGRSSSSSGRGSSSSSSTSKSVLKTEICRAWEETGNCRYDSKCQFAHGKEELHPSRPSMKSKSGAQTSKSSIRAGSSLYGPSSRIVRQQGAVAEYVRMTLSQPTSPDLHHSRANFKTLNDWSPVDDGIEVFLPSNGSDKTPSREEVNAYISSIPHGVTAKRRLPVFAALCLGQRSP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2024 337 MobiDBLite consensus disorder prediction 155 180 - -
Apr3g2024 337 SUPERFAMILY CCCH zinc finger 182 214 IPR036855 GO:0046872
Apr3g2024 337 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Apr3g2024 337 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 6 329 - -
Apr3g2024 337 MobiDBLite consensus disorder prediction 160 180 - -
Apr3g2024 337 MobiDBLite consensus disorder prediction 210 241 - -
Apr3g2024 337 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Apr3g2024 337 Gene3D - 175 216 - -
Apr3g2024 337 MobiDBLite consensus disorder prediction 220 241 - -
Apr3g2024 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 210 IPR000571 GO:0046872
Apr3g2024 337 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 329 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2024 180 215 C3H Transcription Factor Family AT1G68200 52.778 1.28e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr3g2024 zf-CCCH 7.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2024 - K18753 gmx:102665928 326.635