Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2017 ATGGCAGCTGCAACATCTGGTGGTGTGTTAAATGGGTTTGGATCTCATTTCTTATGTGGAGGAAAGAGGAGCAAAGCCCTTCTGGCTGCTGGCATTGGAGGCAAAGTTGGTGCTGCTGTTAGTCGCAGAAGAGTTATCGTTGCTGCTGCCCCAAAGAAATCATGGATCCCTGCTGTGAAGGGTGGTGGAAATTTCGTTGACCCAGAATGGCTTGATGGCTCGCTACCAGGTGACTATGGTTTTGACCCACTGGGTCTAGGCAAGGACCCAGCATTCCTGAAATGGTATAGGGAAGCTGAACTCATTCATGGGAGGTGGGCAATGGCGGCAGTTGTAGGAATCTTTGTTGGGCAGGCCTGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGATCCTAATGCACTTGCTCCTTTCTCCTTTGGTACTCTATTAGGTACCCAATTGCTTCTCATGGGATGGGTTGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCACAATCAGTGGAATGGGCCACCCCATGGTCAAGAACTGCTGAGAACTTTGGCAATGCTACTGGTGATCAAGGCTACCCTGGGGGAAAATTCTTTGACCCTTTGGGATTTGCTGGCATCATCAAGGATGGTGTCTACATTCCAGATGCAGAGAAGCTAGAAAGACTGAAATTGGCTGAGATTAAGCATGCTAGGATTGCAATGTTGGCTATGCTGATTTTCTACTTTGAGGCTGGACAGGGGAAGACACCTCTTGGTGCTCTTGGCTTGTAA 771 0.4903 MAAATSGGVLNGFGSHFLCGGKRSKALLAAGIGGKVGAAVSRRRVIVAAAPKKSWIPAVKGGGNFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWFEAGADPNALAPFSFGTLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFGNATGDQGYPGGKFFDPLGFAGIIKDGVYIPDAEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2017 256 Gene3D Chlorophyll a/b binding protein domain 68 255 - -
Apr3g2017 256 SUPERFAMILY Chlorophyll a-b binding protein 63 256 - -
Apr3g2017 256 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 256 - -
Apr3g2017 256 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 256 IPR001344 GO:0009765|GO:0016020
Apr3g2017 256 Pfam Chlorophyll A-B binding protein 68 244 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2017 Apr-Chr3 36179744 36181906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2017 1 256 Chloroplast and Mitochondria Gene Families AT1G15820 82.308 1.19e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2017 K08917 - gmx:100783223 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2017 3 36179744 36181906 Apr1g1203 1 20674400 20678614 PCT