Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2002 ATGTCTCACTTCGGTAGGTCGGGTCCCCCAGACATCTCCGACACTTACTCTCTTCTCGTTCTCAATATAACCTTCCGCACAACCGCTGATGATCTATTCCCTCTATTTGATAAGTATGGGAAGGTCGTGGACATCTTCATCCCCAAAGATCGAAGGACTGGTGAGTCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAAAAGGCCGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACGGTCCAGTTTGCAAAGTATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACTACCCCAAGATCAAGGTACCGGTCAAGGAGCCGCAGTCCTAAAAGAAGATATCGTGATGATTACAGAGACCGGGATTACAGGAGGAGAAGTCGCAGCAGGAGCTATGATAGGTATGAACGGGACAGGTACCGTGGGAGAGATAGAGATTCTCGTCGCCGAAGCAGGAGCCGGAGCACCAGTCTTGATTACAAGGGTCGTGGTAGGGGACGCTATGATGATGAGCATCGTAGTAGAAGCAGAAGCAGATCAGTGGATAGCCGCTCCCCTGCACGTCGCAGTCCTAGTCCTCGAGGGAGTCCTTCCCCTCAGAGGAGTGTTTCCCCTCAAAGGAGTACTTCCCCCAGGAAAAGTCCACGACGCGAAAGTCCTGACAATCGTAGCCGTGATGGAAGGTCTCCTACACCTCGCAGTGTCTCACCATGCGGTCGCCCTGATGCTTCACGAAGCCCATCCCCTCGAAATTCAAATGGTGATGAATAG 807 0.513 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETTPRSRYRSRSRSPKRRYRDDYRDRDYRRRSRSRSYDRYERDRYRGRDRDSRRRSRSRSTSLDYKGRGRGRYDDEHRSRSRSRSVDSRSPARRSPSPRGSPSPQRSVSPQRSTSPRKSPRRESPDNRSRDGRSPTPRSVSPCGRPDASRSPSPRNSNGDE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2002 268 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Apr3g2002 268 SMART rrm2_1 17 90 IPR003954 GO:0003676
Apr3g2002 268 MobiDBLite consensus disorder prediction 102 268 - -
Apr3g2002 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
Apr3g2002 268 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Apr3g2002 268 MobiDBLite consensus disorder prediction 122 196 - -
Apr3g2002 268 MobiDBLite consensus disorder prediction 223 240 - -
Apr3g2002 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Apr3g2002 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Apr3g2002 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Apr3g2002 268 Gene3D - 4 103 IPR012677 -
Apr3g2002 268 MobiDBLite consensus disorder prediction 197 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2002 Apr-Chr3 36093124 36096529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2002 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 6.39e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2002 K12891 - gmx:100778928 335.495