Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1990 ATGGAGTTTGTGAGCACAATTGAAGAGGAAGCAATGATAATGTCCAAGAGTACTAAGAGGGATGAAGAGGGCATATTCTTGACATGGGAGGATTTGCAAGTAAATGTTCCAAATGGAAGAAAGGGTAGGAAACCAATTCTTGAGGGTGTGACAGGTTATGCTAAGCCAGGGCAGCTCTTAGCAATCATGGGACCTTCTGGCTGTGGCAAGTCCACACTTCTTGATGCTTTAGCAGGAAGACTGGGTTCAAGCACAAAGCAAACAGGAAAAATTCTAATCAATGGCCATAGGCAAGCACTGGCTTATGGAACTTCTGCATACGTAACACATGATGATGCTGTATTATCAACATTAACAGTTGGAGAAGCAGTGTACTACTCAGCTCATCTCCAATTTGCAGGGTCAATATCCAACAGAGAGAAGAAAGAGAGAGCAGAATCTACAATCAGACAAATGGGTTTACAAGATGCCATTAACACAAGGATCCAAAGGTGGGGTTCTAAAGGCCTCAGTGAAGGGCAAAAGCGGAGACTAGCCATTTGCATTGAGATTCTTACAAGCCCCAAACTTCTTCTTCTTGATGAACCAACTAGTGGTTTGGACAGTGCTGCTTCCTACTACGTCATGACCAGAATTGCAAGTCTAAAGATTAGAGATGGCATCAAAAGGACAATTGTTGCATCTATCCATCAACCTAACAGCCAAGTCTTTGAACTATTTGATAGTCTCTGTCTCCTGTCTTCAGGTGAAACAGTATATTTTGGCCCTACTTCTGCTGCAACTGAGTATTTTGCTTCAAAGGGCTTCCCTTGTCCACCTCTCCATAACCCTTCTGATCATTTCCTGAGGATCATAAACAAGGATTTCAAACTGGATGATGAAGAATGCTTCCTTGCAATAGTACCCAAAGAAGAAGCAGTTGATATCCTGACAAAGTTTTATAAATCTTCTGAAATTAGCAACCAAGTTAAAAAAGAAGTAGCAGCAATAGGTGAAAGGGAATATAATTTTGTGGAGGGAAACAAAACACGGGCTGCATTTTTTTATCAGTGCCACATTCTCATGAGAAGATCTTCAAAGCACCTGTTTCGTGATGTAAGCAATTATTGGTTACGTCTAGCTATGTTTGTTCTAGCAGCTATTAGTCTGGGCACTATTTTCTACGACGTTGGTTCAAGTAATGCATCTATTCAGGCTAGAGGAGCACTGGTGTCTTTTGTTGCTTCCGTCCTCACTTTCATAACCCTTCTCGGTGGATTCCCTCCATTTGTGGAACAAATGAAGGTATTTCAACGTGAGAGATTGAATGGGCATTATGGCGTTGCTGCTTTTGTCATTAGCCACACATTATCTCCTATTCCATATATGATACTAATGTCACTGATTCCCGGAGTGATTGCCTATTACCTTTCTGGACTTCACAAAGGACTTGAACGTTGCCTATACTTTTCCTCTGTGCTATTTGCTTGTATATTGTGGGTTGAAAGCCTCATGATGGTTGTTGCAAGTATCTTCCCCAATCCCAACACAGGAATCACAGTCTGTGGTGGGATTGTGGGAGTCATGATTTTAACTGGTGGATTCTTTCGCCTTCCAAATGACCTTCCCAAACCATTTTGGAAATACCCAATGTACTATGTTTCCTTCCACAAGTATGCCTTCCAAGGACTATTCAAGAATGAGTTCATTGGTTTAAAGTTGGCTAGTGATCATGATGGAGGCACCAACATTAGTGATAAAGAAATACTAAGAAAGATATGGCAAGTGGAATTGGGTTACTCAAAGTGGCTCGATTTTGCTATCTTAATGGGAATAATTGCTTTGTATAGACTTATGTTCTTGGCAATCACTAAGAGCAAGGAGAAGATGAAAAAGGCTTGA 1881 0.411 MEFVSTIEEEAMIMSKSTKRDEEGIFLTWEDLQVNVPNGRKGRKPILEGVTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSSTKQTGKILINGHRQALAYGTSAYVTHDDAVLSTLTVGEAVYYSAHLQFAGSISNREKKERAESTIRQMGLQDAINTRIQRWGSKGLSEGQKRRLAICIEILTSPKLLLLDEPTSGLDSAASYYVMTRIASLKIRDGIKRTIVASIHQPNSQVFELFDSLCLLSSGETVYFGPTSAATEYFASKGFPCPPLHNPSDHFLRIINKDFKLDDEECFLAIVPKEEAVDILTKFYKSSEISNQVKKEVAAIGEREYNFVEGNKTRAAFFYQCHILMRRSSKHLFRDVSNYWLRLAMFVLAAISLGTIFYDVGSSNASIQARGALVSFVASVLTFITLLGGFPPFVEQMKVFQRERLNGHYGVAAFVISHTLSPIPYMILMSLIPGVIAYYLSGLHKGLERCLYFSSVLFACILWVESLMMVVASIFPNPNTGITVCGGIVGVMILTGGFFRLPNDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLASDHDGGTNISDKEILRKIWQVELGYSKWLDFAILMGIIALYRLMFLAITKSKEKMKKA* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1990 626 Pfam ABC-2 type transporter 349 562 IPR013525 GO:0016020|GO:0140359
Apr3g1990 626 Pfam ABC transporter 48 198 IPR003439 GO:0005524
Apr3g1990 626 Gene3D - 14 268 IPR027417 -
Apr3g1990 626 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 8 625 - -
Apr3g1990 626 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 8 625 - -
Apr3g1990 626 SMART AAA_5 56 250 IPR003593 -
Apr3g1990 626 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 273 IPR003439 GO:0005524
Apr3g1990 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 266 IPR027417 -
Apr3g1990 626 Pfam ABC-2 type transporter 230 291 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1990 Apr-Chr3 35951332 35955404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1990 54 208 Calmodulin-binding Proteins AT2G36910 29.375 5.69e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1990 K05681 - gmx:100784793 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1990 3 35951332 35955404 Apr3g1990 3 35951332 35955404 ECH