Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1987 ATGGAACACGACGACGTTGATATGGGCGGTGCAGACAACAATGAAGCTGAATTGGATGACATGAAGAAACGCTTGAAGGAAATGGAAGACGAAGCTGATGCTTTGCGCGAGATGCAGGCCAAAGTGGAAAAGGAGATGGGATCTGTACAAGATCCTGCTACTGGTGCTGCAAGTCAGAACAATAGAGAGGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTGGATTATTCATGCACTCCCGAAGAAGTGCAGCAGCACTTCCAATCATGTGGAACAGTAAACCGAGTCACCATCCGCACTGATAAGTTTGGCCAACCAAAGGGTTATGCTTACGTGGAGTTTCTTGAAGTAGAGGCTGTTCAAGAGGCTCTTTTACTGAATGAATCTGAACTACATGGGCGTCAATTGAAGGTAACTGCCAAGAGGACCAACATACCGGGGATGAAGCAATACCGTCCCCGCCGGCCTAATCCTCACATGGGGTTTCAAGGCAGAAACCCATATGCACCTCCCTTTGCCTTTGCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGATACAGCCCCTACTATTGA 591 0.4738 MEHDDVDMGGADNNEAELDDMKKRLKEMEDEADALREMQAKVEKEMGSVQDPATGAASQNNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPHMGFQGRNPYAPPFAFAPYGYGKVPRFRMAMRYSPYY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1987 196 Gene3D - 9 141 IPR012677 -
Apr3g1987 196 MobiDBLite consensus disorder prediction 1 67 - -
Apr3g1987 196 CDD RRM_II_PABPs 69 140 - -
Apr3g1987 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Apr3g1987 196 MobiDBLite consensus disorder prediction 52 67 - -
Apr3g1987 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Apr3g1987 196 Coils Coil 11 45 - -
Apr3g1987 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Apr3g1987 196 PANTHER - 4 193 - -
Apr3g1987 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Apr3g1987 196 SUPERFAMILY RNA-binding domain, RBD 59 167 IPR035979 GO:0003676
Apr3g1987 196 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1987 Apr-Chr3 35928054 35933265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1987 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1987 K14396 - mnt:21400190 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1987 3 35928054 35933265 Apr1g1229 1 21010411 21015165 PCT