Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1984 ATGGGAGAAAAACATGACGGCATTACTGTGACGTGGGAGAATTTGGAGGCCACAGTTACGAATGGAAAGAGTAGAAAACAAATTCTGCATGGACTAACAGGTTATGCTCAGCCAGGGAAGCTTTTAGCTATAATGGGTCCTTCAGGCTGTGGCAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTGAGATCAAACATAAAGCAAACGGGGAAGATCTTAATCAATGGCCGCAAACAAGAACTGGCATATGGAACATCAGGCTATGTAACACAAGAAGAAGCTATGTTGTCCACTTTAACTGCTAGAGAAACTTTATACTACTCGGCTCAGCTCCAATTTCCAGATTCAATGTCCATAGCAGAGAAGAAAGAACAAGCAGATATCACACTGAGAGAAATGGGTCTACAAAATGCCATTAACACAAGGGTTGGAGGGTGGAGTTCTAAAGGCCTGAGTGGGGGACAAAAGAGGAGACTTAGCATTTGCATTGAGATTCTAACACGCCCAAAACTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCCTCTTATTATGTTATGAGTAAAATTGCAAGTCTAAATCAAAGAGATGGAATTCAAAGGACTATTGTTGCTTCCATTCATCAACCCAGCAGTGAAGTTTTTGAACTTTTCCATGATCTTTTCCTTCTGTCTTCTGGGGAGACAGTATATTTTGGTCCTGCGTCTGATGCAAATCAGTTTTTTGCTTCAAATAGCTTTCCTTGCCCACCTCTCCATAATCCTTCCGATCATTACTTAAGGATCATAAACAAAGATTTCAATCAGGATGCTGAAGAAGGCTTTGGTAATGGAGTAACTGCTGAATTAGCAATTAATACCCTTGTAAATTCTTATAAATCGTCTGATATTAGAAATCAAGTTCAACTTGAAGTGGCAAAAATAAGTGAAAGCGATTCCGGTGCAAACGGTAAGAAGAAGATCCACGCTGCGTTCCTCACTCAGTGCCTCGTTCTTACGAAAAGATCTTCACTCCAAATCTATCGTGACATAAGCAATTATTGGTTACGTCTTGTTGTCTTTATGGCAATAGCTGCAAGCGTGGGCTCTATCTTCTATCACGTAGGCCTAAGCATGGAATCGATACAGGACAGAGGATCGCTGCTTTGCTTTTTTATTTCAGTTCTGGCTTTCATGACACTCGTTGGTGGATTCTCTCCATTAATCGAGGAAATGAAGAATTTTGAATACAAATTCTTCTCTTGTCAGCTCTGAAGAATTAATTAAGGTATTCTGATTAATGATTAATTGTCTTACTTTTCAACTAAAATTTTCCTTTCATTGTGTCAGGTATTTGAACGAGAGAGATTAAATGGGCACTACGGTATTACAGCTTTTCTCATAGGCAACATATTATCTGCTATTCCCTACATACTAATGATATCTCTTATTCCCGGAATTATAGTTACATACCTTTCTGGATTACACAAAGGACTAGAAAACATTTTATATTTTATTTCTGTTCTATTTGCCATTGTGATGTGGGTTGAGAGTCTTATGATGGTTGTTGGGAGTATCTTTCCAAATTTCGTAATCGGTGTGTTCATTGCTGGTGGAATGGAAGGGCTTATGATTTTAGCAGGTGGATTCTATCGACTACCAAATGATCTTCCTAAGCCATTATGGAAATACCCTTTGTACTATGTTTCTTTCTTAGCATATGCTCTCCAAGGGTTGTTAAAGAACGAATTTGAAGGCTTAACATTTGTTTTGGATCAAGGTGATGGTGCCAAAACCAAGAGTGGTAGAATGATATTGGCTGAGACATGGCACGTGCAAATGGGTTACTCCAAGTGGGTTGATCTTGCTATCATGTTTGGAATGATTGTTCTATATCGTGTTTTGTTCTTGACCATCGTTAAGAGCAAGGAGAAGTTCAAACCTATGCCTGGGATGAAATCAATCGAAAATGGGAAAGTTGATCATGCAAATGAAGAGAAGGGGGTTTTCTTGACGTGGGAGGACCTGTGGGTGACTGTTTCAAATGAAAGAAAGAATGGAAGGAAGCCAATACTTGAGGGCCTAAAAGGTTATGCCAAACCAGGACAACTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCAACACTGCTTGATGCTTTAGCGGGAAGATTAGGTTCAAGGACAAAGCAAACAGGGAAAATTCTAATCAATGGCAGGAAACAAGCACTAGCTTATGGAGCAACTGCATATGTAACAGAAGATGATACTATTTTGGCAACTCTGACAGTTAAAGAAGCTGTATACTACTCAGCTCACCTTCAATTGCCAGATTCAATGTCCAAGTCAGAAAAACAAGAGAGAGCAGATCTCACAATCAGAGAAATGGGTCTTCAAGATGCTATCAACACAAGGATTGGAGGGTGGGGATCTAAAGGTGTTAGTGGTGGACAAAAAAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCCAGGCTTCTCTTCCTTGATGAACCTACTAGTGGACTTGATAGTGCAGCTTCCTATCATGTTATGAGTAGAATATCTAACTTAAACAAAACGGATGGAATTCAAAGGACTATTATTGCATCAATTCATCAGCCAAGTAATGAAATTTTTCAACTTTTCCACAACCTTTGTCTTCTTTCTTCTGGGAAAACAGTTTACTTTGGACCTGTCTCTGCTGCAAATAAGTTTTTCTCATCAAATGGTTTTCCCTGCCCAAGTCTCCATAGCCCTGCTGATCACTTCGTAAAAACCATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGATTAGCTGGAGGGCTCAGCACTGAAGGATCGATTCATATTCTTGTTAAATCATATGACTCATCTGAGATTCGTCATCAAGTTCAAAGAGAAATTGCTCAAATAAAGAAAAGGGACTTGGACCCAGTGGAGAAGAAATGTCATGCTGACTTTCTTACCCAATGCCTCATTCTTACAAGAAGATCTTTCGTGAATATGTATCGTGAAGTAGGCTATTACTGGTTACGCCTTCTTATCTATGGTGCCTTGGCTTTAAGTCTTGGTACCATGTTCTTTGATATTGGTTCAAGCAGTGAATCAATTCAGGCCAGAGGTTCACTGCTTGTGTTTGTTGTTACATTCCTGACCTTCATAACTGTTGGTGGGTTCCCTTCTTTCGTGGAGGATATGAAGGTTTTTGAACGAGAAAGACTTAATGGGCATTATGGTGTCACTGCATTTACCATTGGCAACACGTTATCTGCTGTTCCATTTCTGTTGTTGATGTCATTGATCCCAGGAGCACTTGTTTATTACCTAGTGGGACTTCAACAAGGGCATGAACAATTTGTGTACTTCATATCTATGCTTTTTATATCTGTCTTCTTGGTTGAGGGTCTTATGATGATTGTTGCAAGTATGGTTCCCAATTTCTTGATGGGTATAATCCTTGGTTCCGGAATTTTGGGCATAATGATGTTAGATGGTGGGTTTTATAGGCTGCCAAGTGATATTCCTAAGCCCTTTTGGAGATACCCTTTGCACTACATTTCCTTCCACAAGTATGCCTACCAAGGACTATTCAAGAATGAGTTTCAAGGTCTAACATTCACTAGCAACCAAGTTGGAGGATCCATGACAATTAGTGGTGAAGATATACTGAAACAAATATGGCAAATGGAAATGAATTATTCAAAGTGGGTGGATTTTGCTATCTTGGTAGGAATGGCAGTGGTATATAGAATTCTATTTTTTGTTATCATCAGGAGCTTTGAGAAGTTGAAACCTATTGTTGCAGCAATTAATTGTCCTCAAGCAAATTTTAGGTTCACTAAAGTGACAAGGAGCAGTGAGATTGATTAG 3873 0.395 MGEKHDGITVTWENLEATVTNGKSRKQILHGLTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLRSNIKQTGKILINGRKQELAYGTSGYVTQEEAMLSTLTARETLYYSAQLQFPDSMSIAEKKEQADITLREMGLQNAINTRVGGWSSKGLSGGQKRRLSICIEILTRPKLLFLDEPTSGLDSAASYYVMSKIASLNQRDGIQRTIVASIHQPSSEVFELFHDLFLLSSGETVYFGPASDANQFFASNSFPCPPLHNPSDHYLRIINKDFNQDAEEGFGNGVTAELAINTLVNSYKSSDIRNQVQLEVAKISESDSGANGKKKIHAAFLTQCLVLTKRSSLQIYRDISNYWLRLVVFMAIAASVGSIFYHVGLSMESIQDRGSLLCFFISVLAFMTLVGGFSPLIEEMKNFEYKFFSCQL*RIN*GILIND*LSYFSTKIFLSLCQVFERERLNGHYGITAFLIGNILSAIPYILMISLIPGIIVTYLSGLHKGLENILYFISVLFAIVMWVESLMMVVGSIFPNFVIGVFIAGGMEGLMILAGGFYRLPNDLPKPLWKYPLYYVSFLAYALQGLLKNEFEGLTFVLDQGDGAKTKSGRMILAETWHVQMGYSKWVDLAIMFGMIVLYRVLFLTIVKSKEKFKPMPGMKSIENGKVDHANEEKGVFLTWEDLWVTVSNERKNGRKPILEGLKGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSRTKQTGKILINGRKQALAYGATAYVTEDDTILATLTVKEAVYYSAHLQLPDSMSKSEKQERADLTIREMGLQDAINTRIGGWGSKGVSGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISNLNKTDGIQRTIIASIHQPSNEIFQLFHNLCLLSSGKTVYFGPVSAANKFFSSNGFPCPSLHSPADHFVKTINKDFEQDPEKGLAGGLSTEGSIHILVKSYDSSEIRHQVQREIAQIKKRDLDPVEKKCHADFLTQCLILTRRSFVNMYREVGYYWLRLLIYGALALSLGTMFFDIGSSSESIQARGSLLVFVVTFLTFITVGGFPSFVEDMKVFERERLNGHYGVTAFTIGNTLSAVPFLLLMSLIPGALVYYLVGLQQGHEQFVYFISMLFISVFLVEGLMMIVASMVPNFLMGIILGSGILGIMMLDGGFYRLPSDIPKPFWRYPLHYISFHKYAYQGLFKNEFQGLTFTSNQVGGSMTISGEDILKQIWQMEMNYSKWVDFAILVGMAVVYRILFFVIIRSFEKLKPIVAAINCPQANFRFTKVTRSSEID* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1984 1287 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 5 430 - -
Apr3g1984 1287 Gene3D - 9 256 IPR027417 -
Apr3g1984 1287 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 443 643 - -
Apr3g1984 1287 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 657 1280 - -
Apr3g1984 1287 CDD ABCG_EPDR 662 894 - -
Apr3g1984 1287 Pfam ABC transporter 30 180 IPR003439 GO:0005524
Apr3g1984 1287 Pfam ABC-2 type transporter 212 314 IPR043926 GO:0140359
Apr3g1984 1287 Pfam ABC-2 type transporter 869 925 IPR043926 GO:0140359
Apr3g1984 1287 SMART AAA_5 695 884 IPR003593 -
Apr3g1984 1287 SMART AAA_5 38 240 IPR003593 -
Apr3g1984 1287 Pfam ABC transporter 689 837 IPR003439 GO:0005524
Apr3g1984 1287 ProSitePatterns ABC transporters family signature. 152 166 IPR017871 GO:0005524
Apr3g1984 1287 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 5 430 - -
Apr3g1984 1287 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 443 643 - -
Apr3g1984 1287 Pfam ABC-2 type transporter 444 578 IPR013525 GO:0016020|GO:0140359
Apr3g1984 1287 Pfam ABC-2 type transporter 987 1199 IPR013525 GO:0016020|GO:0140359
Apr3g1984 1287 Pfam ABC-2 type transporter 331 415 IPR013525 GO:0016020|GO:0140359
Apr3g1984 1287 ProSitePatterns ABC transporters family signature. 809 823 IPR017871 GO:0005524
Apr3g1984 1287 CDD ABCG_EPDR 7 237 - -
Apr3g1984 1287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 665 912 IPR003439 GO:0005524
Apr3g1984 1287 Gene3D - 652 906 IPR027417 -
Apr3g1984 1287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 255 IPR003439 GO:0005524
Apr3g1984 1287 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 657 1280 - -
Apr3g1984 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 245 IPR027417 -
Apr3g1984 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 901 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1984 Apr-Chr3 35873814 35889081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1984 685 894 Calmodulin-binding Proteins AT2G36910 26.977 1.72e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1984 K05681 - gmx:100794527 1567.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1984 3 35873814 35889081 Apr3g1984 3 35873814 35889081 ECH