Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1978 ATGGGGCTGCAATACAGAAAGTTGTTTCCACCATCTTGTTATTATTGTGATCCTTACACTCCACCGTCACCAATCCCTCCTTACTACCCAGATGAAGGAGGAGAGATTCAAACTCCCAGCAAACACAACAAAATCTCCACCTACTTGATCATAAGTTTTGCTCTTGCAGCCACAGCTTTCTTTGGTCTTTGCTGCTACGCCATCTATGCAAAGTTTTTCTCTAGTAGGAGTAGGTCGAGGAGAAGGGCTTTGTCACAGCAGCAAACAGAAGATCCTTTTGTTGATGAAGAAGATGGTCCTGTGATTGACCACCCCATTTGGTATATCCGCACCATTGGTCTTCAACAATCAATCATTGGTGCCATCACTGTTTGTAAGTACAAGGGAGGCGAAGGGTTGATTGAGGGAACAGAATGTGCTGTTTGTTTGAGTGAGTTTCAAGAGGATGAGAATCTTAGGCTTTTGCCAAAGTGTAACCACGCTTTCCATTTACCTTGTATTGATACTTGGCTTAGATCACATACCAATTGCCCCATGTGCCGTGCTCCTATTGTTATTGACCCTACAAGGATTCCATCTATGGAGCCTAATGCTTTTGGTTCAAGTTCTTTGGAAACTGCCCAGATGGAAGTTTTGGAAGATAGGGGTGAGGACAATGGTGGAATGGAAAATAGTGTTGATCAGTTGAGGAATAGAGAAGAGGAAGAAGGACAAGAAGTTGGAGAAGGGAGAAGAGTATGTGAAACTGAGAGATCAGATTCCGATTTGGTTAACATGCAACCTAGAAGATCAGTGTCTTTGGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTTGCAACTGTTATGTCAGTGGAATCTCGTGGGAATTCAAAGAGGATTGCTACTGCTGCAAAAGGGGGTTCTTCTTCTAGGACAAGGTATCTGCATAGTGAGCCTAGTTCAATGAAGAGGTCAAGGTCCTTCAACGCCAAACATCTATTATCATGGTATAGCCGCAGTCAGAGAAAGCCAAATGCTCCTCTCAGAAGCTTTTGA 1038 0.4335 MGLQYRKLFPPSCYYCDPYTPPSPIPPYYPDEGGEIQTPSKHNKISTYLIISFALAATAFFGLCCYAIYAKFFSSRSRSRRRALSQQQTEDPFVDEEDGPVIDHPIWYIRTIGLQQSIIGAITVCKYKGGEGLIEGTECAVCLSEFQEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVIDPTRIPSMEPNAFGSSSLETAQMEVLEDRGEDNGGMENSVDQLRNREEEEGQEVGEGRRVCETERSDSDLVNMQPRRSVSLDSSSAAKINLALATVMSVESRGNSKRIATAAKGGSSSRTRYLHSEPSSMKRSRSFNAKHLLSWYSRSQRKPNAPLRSF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1978 345 MobiDBLite consensus disorder prediction 215 257 - -
Apr3g1978 345 Pfam Ring finger domain 138 181 IPR001841 -
Apr3g1978 345 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 297 IPR044675 -
Apr3g1978 345 MobiDBLite consensus disorder prediction 289 320 - -
Apr3g1978 345 MobiDBLite consensus disorder prediction 215 258 - -
Apr3g1978 345 CDD RING-H2_PA-TM-RING 138 181 - -
Apr3g1978 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 187 IPR013083 -
Apr3g1978 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 297 - -
Apr3g1978 345 SMART ring_2 139 180 IPR001841 -
Apr3g1978 345 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Apr3g1978 345 SUPERFAMILY RING/U-box 133 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1978 Apr-Chr3 35817481 35819064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1978 4 227 C3H Transcription Factor Family AT1G72220 40.221 3.03e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1978 - - gmx:100801551 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1978 3 35817481 35819064 Apr3g1978 3 35817481 35819064 ECH